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用于抗碳酸酐酶的异恶唑衍生物:合成、分子对接、分子动力学模拟以及结合研究的自由能计算

Isoxazole Derivatives against Carbonic Anhydrase: Synthesis, Molecular Docking, MD Simulations, and Free Energy Calculations Coupled with Studies.

作者信息

Saleem Afia, Farooq Umar, Bukhari Syed Majid, Khan Sara, Zaidi Asma, Wani Tanveer A, Shaikh Ahson Jabbar, Sarwar Rizwana, Mahmud Shafi, Israr Muhammad, Khan Farhan A, Shahzad Sohail Anjum

机构信息

Department of Chemistry, COMSATS University Islamabad, Abbottabad Campus, Abbottabad 22010, KPK, Pakistan.

Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia.

出版信息

ACS Omega. 2022 Aug 15;7(34):30359-30368. doi: 10.1021/acsomega.2c03600. eCollection 2022 Aug 30.

Abstract

Heterocyclic compounds with a five-membered ring as a core, particularly those containing more than one heteroatom, have a wide spectrum of biological functions, especially in enzyme inhibition. In this study, we present the synthesis of five-membered heterocyclic isoxazole derivatives via sonication of ethyl butyrylacetate with aromatic aldehyde in the presence of a SnII-Mont K10 catalyst. The synthesized compounds were characterized using sophisticated spectroscopic methods. testing of the compounds reveals three derivatives with significant inhibitory action against carbonic anhydrase (CA) enzyme. The compound AC2 revealed the most promising inhibitory activity against CA among the entire series, with an IC = 112.3 ± 1.6 μM (% = 79.5) followed by AC3 with an IC = 228.4 ± 2.3 μM (% = 68.7) compared to the standard with 18.6 ± 0.5 μM (% = 87.0). Molecular docking (MD) study coupled with extensive MD simulations (400 ns) and MMPBSA study fully supported the enzyme inhibition results, evident from the computed Δ (AC2 = -13.53 and AC3 = -12.49 kcal/mol). The and studies are also augmented by a fluorescence-based enzymatic assay in which compounds AC2 and AC3 showed significant fluorescence enhancement. Therefore, on the basis of the present study, it is inferred that AC2 and AC3 may serve as a new framework for designing effective CA inhibitors.

摘要

以五元环为核心的杂环化合物,特别是那些含有不止一个杂原子的化合物,具有广泛的生物学功能,尤其是在酶抑制方面。在本研究中,我们展示了在SnII-Mont K10催化剂存在下,通过丁酸乙酰乙酯与芳香醛的超声处理来合成五元杂环异恶唑衍生物。使用精密的光谱方法对合成的化合物进行了表征。对这些化合物的测试揭示了三种对碳酸酐酶(CA)具有显著抑制作用的衍生物。在整个系列中,化合物AC2对CA显示出最有前景的抑制活性,IC = 112.3 ± 1.6 μM(% = 79.5),其次是AC3,IC = 228.4 ± 2.3 μM(% = 68.7),而标准品的IC为18.6 ± 0.5 μM(% = 87.0)。分子对接(MD)研究结合广泛的MD模拟(400 ns)和MMPBSA研究充分支持了酶抑制结果,从计算出的Δ(AC2 = -13.53和AC3 = -12.49 kcal/mol)可以明显看出。基于荧光的酶促测定也增强了结合亲和力和抑制常数研究,其中化合物AC2和AC3显示出显著的荧光增强。因此,根据本研究推断,AC2和AC3可能作为设计有效CA抑制剂的新框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e5d/9434621/5d288abad232/ao2c03600_0002.jpg

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