The First Affiliated Hospital of Wannan Medical College, Yijishan Hospital, Wuhu 241001, Anhui, China; Wannan Medical College, Wuhu 241002, Anhui, China.
The First Affiliated Hospital of Wannan Medical College, Yijishan Hospital, Wuhu 241001, Anhui, China; Wannan Medical College, Wuhu 241002, Anhui, China.
Med Eng Phys. 2022 Dec;110:103883. doi: 10.1016/j.medengphy.2022.103883. Epub 2022 Aug 31.
Ovarian cancer (OC) is one of the most lethal malignancies in the female reproductive system. To find genes related to cancer progression targeting specific biological factors for targeted therapy, bioinformatics technology has been widely used. To screen the prognostic gene markers of OC by bioinformatics and explore their potential molecular biological mechanisms. Two data sets related to OC, GSE54388, and GSE119056, were rooted in the open comprehensive gene expression database (GEO). To correct the background of the data, standardize and screen differentially expressed genes (DEGs) using the R software limma package. The selected DEGs were enriched by Gene Ontology (GO) and through DAVID online database. Kyoto Encyclopedia of Genes and Genomes (KEGG) signal pathway analysis and protein-protein interaction network (PPI-network) map were constructed by STRING online database and Cytoscape software. Combined with the TCGA database, univariate and multivariate COX regression were used to screen prognostic genes. QRT-PCR was used to verify DEGs in clinical tissue samples. Eventually, the function of RBMS3 on the viability, migration, invasion, and apoptosis of OC cells was tested through functional experiments in vitro. 352 common DEGs were screened from GSE54388 and GSE119056 data sets. Survival analysis showed that MEIS2, TSTA3, CNTN1, RBMS3, and TRA2A were considered to be connected with the prognosis of OC. We discover that the expression level of RBMS3 was positively connected with the overall survival (OS) rate of sufferers with OC. The level of RBMS3 in OC tissues was markedly lower than that in neighboring structures and the outcomes of the GEPIA database were consistent with those of the qRT-PCR experiment. Through gene transfection technology it was found that overexpression of RBMS3 in OC cells substantially suppressed the vitality, migration, and invasion of OC cells and raised the rates of apoptosis in the OC cells. In this experiment, we distinguish 5 genes that may participate in the prognosis of OC and showed the key genes and pathways related to OC. It is speculated that RBMS3, a tumor suppressor gene, can be applied as a potential biological marker for the treatment of OC, gene expression summary, and prognosis.
卵巢癌 (OC) 是女性生殖系统中最致命的恶性肿瘤之一。为了找到针对特定生物因素的靶向治疗的癌症进展相关基因,生物信息学技术已被广泛应用。通过生物信息学筛选 OC 的预后基因标志物,并探讨其潜在的分子生物学机制。两个与 OC 相关的数据集中,GSE54388 和 GSE119056,均来源于开放的综合基因表达数据库 (GEO)。使用 R 软件 limma 包校正数据背景,标准化并筛选差异表达基因 (DEGs)。通过 DAVID 在线数据库对选择的 DEGs 进行基因本体论 (GO) 富集分析。京都基因与基因组百科全书 (KEGG) 信号通路分析和蛋白质-蛋白质相互作用网络 (PPI-network) 图谱由 STRING 在线数据库和 Cytoscape 软件构建。结合 TCGA 数据库,使用单变量和多变量 COX 回归筛选预后基因。实时荧光定量聚合酶链式反应 (qRT-PCR) 用于验证临床组织样本中的 DEGs。最后,通过体外功能实验测试 RBMS3 对 OC 细胞活力、迁移、侵袭和凋亡的功能。从 GSE54388 和 GSE119056 数据集筛选出 352 个共同的 DEGs。生存分析表明,MEIS2、TSTA3、CNTN1、RBMS3 和 TRA2A 与 OC 的预后相关。我们发现 RBMS3 的表达水平与 OC 患者的总生存率 (OS) 呈正相关。OC 组织中 RBMS3 的水平明显低于邻近结构,GEPIA 数据库的结果与 qRT-PCR 实验的结果一致。通过基因转染技术发现,在 OC 细胞中过表达 RBMS3 可显著抑制 OC 细胞的活力、迁移和侵袭,并提高 OC 细胞的凋亡率。在这项实验中,我们区分了 5 个可能参与 OC 预后的基因,并显示了与 OC 相关的关键基因和途径。推测肿瘤抑制基因 RBMS3 可作为 OC 治疗、基因表达总结和预后的潜在生物标志物。