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全基因组鉴定和分析.中的热休克蛋白 70 家族

Genome-Wide Identification and Analysis of Heat Shock Protein 70 Family in .

出版信息

Pak J Biol Sci. 2022 Jun;25(7):608-618. doi: 10.3923/pjbs.2022.608.618.

Abstract

<b>Background and Objective:</b> In plants, the 70 kDa heat shock proteins (Hsp70-s) play important roles during growth and development and in response to stresses. This study aimed to provide comprehensive information on the <i>Hsp70 </i>family in cocoa (<i>Theobroma cacao</i>), one of the most important tropical perennial cash crops worldwide. <b>Materials and Methods:</b> A basic local alignment search tool (TBLASTN) against the cocoa genome was performed using <i>Arabidopsis</i> Hsp70-s as queries to detect TcHsp70-s. Sequence analyses were carried out by various bioinformatics tools. <b>Results:</b> A total of 18 members of the <i>Hsp70</i> family has been detected and characterized in the cocoa genome. All general properties, such as physic-chemical parameters, gene structure, phylogenetic tree and sub-cellular localization, were determined using a variety of bioinformatics tools. The expression patterns of the <i>TcHsp70</i> genes in different stages of the zygotic and somatic embryos were investigated. In addition, expression profiles of the <i>TcHsp70</i> genes under <i>Phytophthora megakarya</i> inoculation were analyzed. <b>Conclusion:</b> The results of this study revealed the features and expression analyses of <i>Hsp70</i> genes in cocoa. These findings could provide a strong foundation for further research of the <i>TcHsp70</i> family, which could aid in the development and stress tolerance of cocoa species.

摘要

<b>背景和目的:</b>在植物中,70kDa 热休克蛋白(Hsp70-s)在生长发育和应对胁迫过程中发挥着重要作用。本研究旨在为可可(<i>Theobroma cacao</i>)中 <i>Hsp70</i> 家族提供全面的信息,可可作为全球最重要的热带多年生经济作物之一。<b>材料和方法:</b>使用 <i>Arabidopsis</i> Hsp70-s 作为查询,对可可基因组进行基本局部比对搜索工具(TBLASTN),以检测 TcHsp70-s。通过各种生物信息学工具进行序列分析。<b>结果:</b>在可可基因组中检测到并鉴定了 18 个 <i>Hsp70</i> 家族成员。使用各种生物信息学工具确定了所有一般特性,如理化参数、基因结构、系统发育树和亚细胞定位。研究了 <i>TcHsp70</i> 基因在合子和体细胞胚胎不同阶段的表达模式。此外,还分析了 <i>TcHsp70</i> 基因在 <i>Phytophthora megakarya</i> 接种下的表达谱。<b>结论:</b>本研究结果揭示了可可中 <i>Hsp70</i> 基因的特征和表达分析。这些发现为进一步研究 <i>TcHsp70</i> 家族提供了坚实的基础,这有助于可可物种的开发和胁迫耐受。

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