Suppr超能文献

利用木瓜基因组数据鉴定和分析热休克蛋白 70 编码基因

Genome-Wide Identification and Analysis of Genes Encoding Putative Heat Shock Protein 70 in Papaya ().

出版信息

Pak J Biol Sci. 2022 Jan;25(6):468-475. doi: 10.3923/pjbs.2022.468.475.

Abstract

<b>Background and Objective:</b> In high plants, the 70 kDa heat stress proteins (Hsp70-s) have been regarded as one of the vital components of the cellular network of chaperones and folding catalysts that play important roles in numerous biological processes during growth and development. The Hsp70 families have been reported in many plant species, unfortunately, no information on this important protein family in papaya (<i>Carica papaya</i>). The objective of this study was to provide comprehensive information on the CpHsp70 family in papaya. <b>Materials and Methods:</b> The <i>CpHsp70</i> genes in the papaya genome were identified by a basic local alignment search tool against the papaya genome database by using well-known <i>Arabidopsis</i> Hsp70-s. Sequences were then analyzed by various bioinformatics tools to investigate the characteristics of the CpHsp70 family. <b>Results:</b> A total of 12 members of the CpHsp70 family has been identified and characterized in papaya. By using various computational tools, these results revealed that all general characteristics of the CpHsp70 family, like physic-chemical parameters, gene structure, phylogenetic tree and subcellular localization were provided. The transcriptome atlas was applied to re-analyze the expression patterns of genes encoding the CpHsp70 family in major tissues/organs during the growth and development of papaya plants. <b>Conclusion:</b> Results from this work exhibited the characteristics and expression analysis of the <i>CpHsp70</i> genes of this important tropical fruit crop. Taken together, this study could provide a solid foundation of the CpHsp70 family, which will be helpful in the construction of stress tolerance in papaya plants.

摘要

<b>背景和目的:</b>在高等植物中,70kDa 热应激蛋白(Hsp70-s)被认为是伴侣和折叠催化剂细胞网络的重要组成部分之一,在生长和发育过程中的许多生物学过程中发挥着重要作用。Hsp70 家族已在许多植物物种中被报道,但不幸的是,在木瓜(<i>Carica papaya</i>)中没有关于这个重要蛋白质家族的信息。本研究的目的是提供木瓜中 CpHsp70 家族的综合信息。<b>材料和方法:</b>通过使用针对木瓜基因组数据库的基本局部比对搜索工具,从木瓜基因组中鉴定出<i>CpHsp70</i>基因,使用众所周知的<i>拟南芥</i>Hsp70-s。然后通过各种生物信息学工具对序列进行分析,以研究 CpHsp70 家族的特征。<b>结果:</b>共鉴定并鉴定了 12 个木瓜 CpHsp70 家族成员。通过使用各种计算工具,这些结果揭示了 CpHsp70 家族的所有一般特征,如物理化学参数、基因结构、系统发育树和亚细胞定位。应用转录组图谱重新分析了编码 CpHsp70 家族的基因在木瓜植株生长和发育过程中主要组织/器官中的表达模式。<b>结论:</b>这项工作的结果展示了这种重要热带水果作物的<i>CpHsp70</i>基因的特征和表达分析。总之,这项研究为木瓜植物的抗逆性构建提供了 CpHsp70 家族的坚实基础。

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验