Rovigatti Lorenzo, Russo John, Romano Flavio, Matthies Michael, Kroc Lukáš, Šulc Petr
Dipartimento di Fisica, Sapienza Università di Roma, P.le Aldo Moro 5, 00185 Rome, Italy.
CNR-ISC Uos Sapienza, Piazzale A. Moro 2, IT-00185 Roma, Italy.
Nanoscale. 2022 Oct 6;14(38):14268-14275. doi: 10.1039/d2nr03533b.
The self-assembly of colloidal diamond (CD) crystals is considered as one of the most coveted goals of nanotechnology, both from the technological and fundamental points of view. For applications, colloidal diamond is a photonic crystal which can open new possibilities of manipulating light for information processing. From a fundamental point of view, its unique symmetry exacerbates a series of problems that are commonly faced during the self-assembly of target structures, such as the presence of kinetic traps and the formation of crystalline defects and alternative structures (polymorphs). Here we demonstrate that all these problems can be systematically addressed SAT-assembly, a design framework that converts self-assembly into a Boolean satisfiability problem (SAT). Contrary to previous solutions (requiring four or more components), we prove that the assembly of the CD crystal only requires a binary mixture. Moreover, we use molecular dynamics simulations of a system composed by nearly a million nucleotides to test a DNA nanotechnology design that constitutes a promising candidate for experimental realization.
从技术和基础研究的角度来看,胶体金刚石(CD)晶体的自组装被认为是纳米技术最令人向往的目标之一。在应用方面,胶体金刚石是一种光子晶体,可为信息处理中的光操纵开辟新的可能性。从基础研究的角度来看,其独特的对称性加剧了目标结构自组装过程中通常会遇到的一系列问题,例如动力学陷阱的存在、晶体缺陷的形成以及替代结构(多晶型物)的形成。在这里,我们证明了所有这些问题都可以通过SAT组装系统地解决,SAT组装是一种将自组装转化为布尔可满足性问题(SAT)的设计框架。与之前的解决方案(需要四种或更多组件)相反,我们证明CD晶体的组装只需要二元混合物。此外,我们使用由近一百万个核苷酸组成的系统的分子动力学模拟来测试一种DNA纳米技术设计,该设计是实验实现的一个有前途的候选方案。