Department of Chemistry and Chemical Biology, Technical University Dortmund, Otto-Hahn-Str. 4a, 44227, Dortmund, Germany.
Department of Chemistry and Pharmacy, Ludwig-Maximilians-University Munich, Butenandtstr. 5-13, 81377, Munich, Germany.
J Biomol NMR. 2022 Dec;76(5-6):197-212. doi: 10.1007/s10858-022-00405-0. Epub 2022 Sep 23.
Site-specific heterogeneity of solid protein samples can be exploited as valuable information to answer biological questions ranging from thermodynamic properties determining fibril formation to protein folding and conformational stability upon stress. In particular, for proteins of increasing molecular weight, however, site-resolved assessment without residue-specific labeling is challenging using established methodology, which tends to rely on carbon-detected 2D correlations. Here we develop purely chemical-shift-based approaches for assessment of relative conformational heterogeneity that allows identification of each residue via four chemical-shift dimensions. High dimensionality diminishes the probability of peak overlap in the presence of multiple, heterogeneously broadened resonances. Utilizing backbone dihedral-angle reconstruction from individual contributions to the peak shape either via suitably adapted prediction routines or direct association with a relational database, the methods may in future studies afford assessment of site-specific heterogeneity of proteins without site-specific labeling.
固体蛋白质样品的特定部位异质性可作为有价值的信息加以利用,以回答从决定纤维形成的热力学性质到蛋白质在压力下折叠和构象稳定性等生物学问题。特别是对于分子量不断增加的蛋白质,然而,在不进行残基特异性标记的情况下,使用现有的方法进行部位分辨评估具有挑战性,因为这些方法往往依赖于基于碳检测的二维相关。在这里,我们开发了基于纯化学位移的方法来评估相对构象异质性,该方法允许通过四个化学位移维度来识别每个残基。高维降低了在存在多个、异质展宽共振的情况下峰重叠的概率。通过适当地改编预测程序或直接与关系数据库相关联,从单个峰形状贡献重建骨架的二面角,该方法在未来的研究中可能无需进行残基特异性标记即可评估蛋白质的特定部位异质性。