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通过多维性、质子检测固态 NMR 对构象异质性进行表征。

Characterization of conformational heterogeneity via higher-dimensionality, proton-detected solid-state NMR.

机构信息

Department of Chemistry and Chemical Biology, Technical University Dortmund, Otto-Hahn-Str. 4a, 44227, Dortmund, Germany.

Department of Chemistry and Pharmacy, Ludwig-Maximilians-University Munich, Butenandtstr. 5-13, 81377, Munich, Germany.

出版信息

J Biomol NMR. 2022 Dec;76(5-6):197-212. doi: 10.1007/s10858-022-00405-0. Epub 2022 Sep 23.

DOI:10.1007/s10858-022-00405-0
PMID:36149571
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9712413/
Abstract

Site-specific heterogeneity of solid protein samples can be exploited as valuable information to answer biological questions ranging from thermodynamic properties determining fibril formation to protein folding and conformational stability upon stress. In particular, for proteins of increasing molecular weight, however, site-resolved assessment without residue-specific labeling is challenging using established methodology, which tends to rely on carbon-detected 2D correlations. Here we develop purely chemical-shift-based approaches for assessment of relative conformational heterogeneity that allows identification of each residue via four chemical-shift dimensions. High dimensionality diminishes the probability of peak overlap in the presence of multiple, heterogeneously broadened resonances. Utilizing backbone dihedral-angle reconstruction from individual contributions to the peak shape either via suitably adapted prediction routines or direct association with a relational database, the methods may in future studies afford assessment of site-specific heterogeneity of proteins without site-specific labeling.

摘要

固体蛋白质样品的特定部位异质性可作为有价值的信息加以利用,以回答从决定纤维形成的热力学性质到蛋白质在压力下折叠和构象稳定性等生物学问题。特别是对于分子量不断增加的蛋白质,然而,在不进行残基特异性标记的情况下,使用现有的方法进行部位分辨评估具有挑战性,因为这些方法往往依赖于基于碳检测的二维相关。在这里,我们开发了基于纯化学位移的方法来评估相对构象异质性,该方法允许通过四个化学位移维度来识别每个残基。高维降低了在存在多个、异质展宽共振的情况下峰重叠的概率。通过适当地改编预测程序或直接与关系数据库相关联,从单个峰形状贡献重建骨架的二面角,该方法在未来的研究中可能无需进行残基特异性标记即可评估蛋白质的特定部位异质性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/c5582367d06a/10858_2022_405_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/9b338929aa38/10858_2022_405_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/d4edf747a7b4/10858_2022_405_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/d4126344c79b/10858_2022_405_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/bc49bc9b64ff/10858_2022_405_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/91e07fb243e1/10858_2022_405_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/c5582367d06a/10858_2022_405_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/9b338929aa38/10858_2022_405_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/d4edf747a7b4/10858_2022_405_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/d4126344c79b/10858_2022_405_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/bc49bc9b64ff/10858_2022_405_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/91e07fb243e1/10858_2022_405_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/257e/9712413/c5582367d06a/10858_2022_405_Fig5_HTML.jpg

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3
SciPy 1.0: fundamental algorithms for scientific computing in Python.SciPy 1.0:Python 中的科学计算基础算法。
Nat Methods. 2020 Mar;17(3):261-272. doi: 10.1038/s41592-019-0686-2. Epub 2020 Feb 3.
4
Advances in studying protein disorder with solid-state NMR.利用固态 NMR 研究蛋白质无序态的进展。
Solid State Nucl Magn Reson. 2020 Apr;106:101643. doi: 10.1016/j.ssnmr.2020.101643. Epub 2020 Jan 12.
5
Non-uniform sampling in quantitative assessment of heterogeneous solid-state NMR line shapes.非均匀采样在异质固态 NMR 线谱定量评估中的应用。
J Biomol NMR. 2020 Jan;74(1):71-82. doi: 10.1007/s10858-019-00291-z. Epub 2019 Dec 13.
6
Determining isoleucine side-chain rotamer-sampling in proteins from C chemical shift.从 C 化学位移确定蛋白质中异亮氨酸侧链构象的抽样。
Chem Commun (Camb). 2019 Dec 7;55(94):14107-14110. doi: 10.1039/c9cc06496f. Epub 2019 Oct 23.
7
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8
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Proc Natl Acad Sci U S A. 2019 Aug 20;116(34):16717-16722. doi: 10.1073/pnas.1908006116. Epub 2019 Aug 6.
9
Two decades of progress in structural and dynamic studies of amyloids by solid-state NMR.固态 NMR 技术在淀粉样纤维结构和动力学研究 20 年的进展。
J Magn Reson. 2019 Sep;306:42-47. doi: 10.1016/j.jmr.2019.07.015. Epub 2019 Jul 9.
10
Stochasticity of Biological Soft Matter: Emerging Concepts in Intrinsically Disordered Proteins and Biological Phase Separation.生物软物质的随机性:无序蛋白质和生物相分离中的新兴概念。
Trends Biochem Sci. 2019 Aug;44(8):716-728. doi: 10.1016/j.tibs.2019.03.005. Epub 2019 Apr 22.