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基于网络药理学、分子对接和分子动力学模拟的半夏泻心汤治疗慢性萎缩性胃炎的作用机制。

Mechanisms of Banxia Xiexin Decoction Underlying Chronic Atrophic Gastritis via Network Pharmacology, Molecular Docking, and Molecular Dynamics Simulations.

机构信息

Nanjing University of Chinese Medicine, Nanjing 210023, China.

Jiangsu Provincial Second Chinese Medicine Hospital, The Second Affiliated Hospital of Nanjing University of Chinese Medicine, Nanjing 210017, China.

出版信息

Comput Math Methods Med. 2022 Sep 15;2022:4237040. doi: 10.1155/2022/4237040. eCollection 2022.

Abstract

Chronic atrophic gastritis (CAG) is a common chronically digestive disease which is notoriously characterized by atrophy of the epithelium and glands of the gastric mucosa, reduced number, thinning of the gastric mucosa, thickening of the mucosal base, or pyloric glandular hyperplasia and intestinal glandular hyperplasia, or with atypical hyperplasia. Banxia Xiexin decoction (BXD) has been applied for two thousand years and is considered an effective therapy for functional dyspepsia, gastroesophageal reflux disease and colon cancer. In this current study, to probe into the underlying mechanism of BXD on CAG, network pharmacology was conducted to collect druggable ingredients and predicted targets of BXD and the CAG-associated targets were harvested to take intersection with druggable ingredients from BXD predicted targets to obtain potential critical action targets. Subsequently, GO enrichment analysis and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis were conducted to elucidate the underlying mechanisms and roles from the perspective of overall pathways and cellular functions. Eventually, molecular docking integrated with molecular dynamics simulations was conducted to further investigate the mechanism of action of BXD active ingredients on CAG from drug molecule-target interactions and to provide a theoretical basis for BXD drug development.

摘要

慢性萎缩性胃炎(CAG)是一种常见的慢性消化系统疾病,其特征为胃黏膜上皮和腺体萎缩、胃黏膜变薄、黏膜基底增厚、或幽门腺增生和肠腺增生、或异型增生。半夏泻心汤(BXD)已应用了两千多年,被认为是治疗功能性消化不良、胃食管反流病和结肠癌的有效疗法。在本研究中,为探讨 BXD 治疗 CAG 的潜在机制,采用网络药理学方法收集 BXD 的可用药成分和预测靶点,并采集与 CAG 相关的靶点,与 BXD 预测靶点中的可用药成分进行交集,以获得潜在的关键作用靶点。随后,进行 GO 富集分析和京都基因与基因组百科全书通路富集分析,从整体通路和细胞功能的角度阐明潜在机制和作用。最后,进行分子对接结合分子动力学模拟,从药物分子-靶点相互作用的角度进一步研究 BXD 活性成分治疗 CAG 的作用机制,为 BXD 药物开发提供理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/520e/9499768/33b46b415b7f/CMMM2022-4237040.001.jpg

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