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DTYMK在人类肿瘤中的预后及免疫作用的泛癌分析

Pan-cancer analysis of prognostic and immunological role of DTYMK in human tumors.

作者信息

Zhao Huihui, Xie Rongrong, Zhang Chenxi, Lu Guojun, Kong Hui

机构信息

Department of Oncology, The Second Hospital of Nanjing, Nanjing University of Chinese Medicine, Nanjing, China.

Department of Respiratory and Critical Care Medicine, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.

出版信息

Front Genet. 2022 Sep 8;13:989460. doi: 10.3389/fgene.2022.989460. eCollection 2022.

Abstract

Deoxythymidylate kinase (DTYMK) has been reported to correlate with the progression of hepatocellular carcinoma. However, the role of DTYMK in human cancers is not studied. In this study, we studied the prognostic value, functional states, and correlations with immune infiltration of DTYMK in human cancers. The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression (GTEx), UALCAN, Clinical Proteomic Tumor Analysis Consortium (CPTAC), the search tool for the retrieval of interacting genes (STRING), GeneMANIA, cBioPortal, Cancer Single-cell State Atlas (CancerSEA), and Tumor IMmune Estimation Resource (TIMER) databases were utilized to analyze DTYMK in cancers. In general, DTYMK is abnormally expressed between most human cancer and normal tissues from a pan-cancer perspective. DTYMK can be used as a diagnostic biomarker to differentiate tumor tissues from normal tissues in most tumors. Upregulation of DTYMK predicted poor survival status in most cancer types in TCGA. Moreover, DTYMK expression was correlated with the T stage in ACC, BRCA, KIRC, LIHC, and LUAD, with the N stage in BLCA, HNSC, KICH, KIRC, LUAD, LUSC, and THCA, with the M stage in ACC, KIRC, KIRP, and LUAD, with TNM stage in ACC, KIRC, LIHC, LUAD, and LUSC. In addition, based on single-cell sequencing data, we concluded that the expression of DTYMK was correlated with the functional status of the cell cycle, DNA damage, DNA repair, invasion, EMT, and proliferation. Finally, DTYMK expression was correlated with six infiltrating immune cells, including B cells, CD4 T cells, CD8 T cells, neutrophils, macrophages, and dendritic cells by investigating TIMER. Our findings suggested that abnormally expressed DTYMK was correlated with poor survival, malignant functional status, and immune infiltrates. DTYMK might be served as a potential biomarker for diagnosis and poor prognosis in various cancer types. DTYMK might act as a potential target for immune therapy.

摘要

据报道,脱氧胸苷酸激酶(DTYMK)与肝细胞癌的进展相关。然而,DTYMK在人类癌症中的作用尚未得到研究。在本研究中,我们研究了DTYMK在人类癌症中的预后价值、功能状态以及与免疫浸润的相关性。利用癌症基因组图谱(TCGA)、基因型-组织表达(GTEx)、UALCAN、临床蛋白质组肿瘤分析联盟(CPTAC)、相互作用基因检索工具(STRING)、GeneMANIA、cBioPortal、癌症单细胞状态图谱(CancerSEA)和肿瘤免疫估计资源(TIMER)数据库对癌症中的DTYMK进行分析。总体而言,从泛癌角度来看,DTYMK在大多数人类癌症组织和正常组织之间存在异常表达。DTYMK可作为一种诊断生物标志物,用于区分大多数肿瘤中的肿瘤组织和正常组织。在TCGA中,DTYMK的上调预示着大多数癌症类型的生存状态较差。此外,DTYMK表达与ACC、BRCA、KIRC、LIHC和LUAD中的T分期相关,与BLCA、HNSC、KICH、KIRC、LUAD、LUSC和THCA中的N分期相关,与ACC、KIRC、KIRP和LUAD中的M分期相关,与ACC、KIRC、LIHC、LUAD和LUSC中的TNM分期相关。此外,基于单细胞测序数据,我们得出结论,DTYMK的表达与细胞周期、DNA损伤、DNA修复、侵袭、上皮-间质转化和增殖的功能状态相关。最后,通过研究TIMER发现,DTYMK表达与六种浸润性免疫细胞相关,包括B细胞、CD4 T细胞、CD8 T细胞、中性粒细胞、巨噬细胞和树突状细胞。我们的研究结果表明,异常表达的DTYMK与不良生存、恶性功能状态和免疫浸润相关。DTYMK可能是各种癌症类型诊断和预后不良的潜在生物标志物。DTYMK可能是免疫治疗的潜在靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad2e/9493117/a86fbf913da7/fgene-13-989460-g001.jpg

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