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一种新型 FadL 同源物 AltL,介导长链烷烃和脂肪酸在不动杆菌 RAG-1 中的运输。

A Novel FadL Homolog, AltL, Mediates Transport of Long-Chain Alkanes and Fatty Acids in Acinetobacter venetianus RAG-1.

机构信息

Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai Universitygrid.216938.7, Tianjin, China.

Tianjin Engineering Technology Center of Green Manufacturing Biobased Materials, Tianjin, China.

出版信息

Appl Environ Microbiol. 2022 Oct 26;88(20):e0129422. doi: 10.1128/aem.01294-22. Epub 2022 Sep 28.

Abstract

Due to the barrier effect of lipopolysaccharide (LPS) in the outer membrane of Gram-negative bacteria, transporters are required for hydrophobic alkane uptake. However, there are few reports on long-chain alkane transporters. In this study, a potential ong-chain kane ransporter (AltL) was screened in Acinetobacter venetianus RAG-1 by comparative transcriptome analysis. Growth and degradation experiments showed that deletion led to the loss of -octacosane utilization capacity of RAG-1. To identify the function of AltL, we measured the existence and accumulation of alkanes in cells through the constructed alkane detection system and isotope transport experiment, which proved its long-chain alkane transport function. Growth experiments using different chain-length -alkanes and fatty acids as substrates showed that AltL was responsible for the transport of (very) long-chain -alkanes (C to C) and fatty acids (C to C) and was also involved in the uptake of medium-chain -alkanes (C to C). Subsequently, we analyzed the distribution of AltL in bacteria, and found that AltL homologs are widespread in -, -, and Deltaproteobacteria. An AltL homolog in Pseudomonas aeruginosa was also identified to participate in long-chain alkane transport by a gene deletion and growth assay. We also found that overexpression of in Pseudomonas aeruginosa enhanced the degradation of C to C -alkanes. In addition, structure analysis showed that AltL has longer extracellular loops than other FadL family members, which may be involved in the binding of alkanes. These results showed that AltL is a novel transporter and that it is mainly responsible for the transport of long-chain -alkanes and (very) long-chain fatty acids and has broad application potential. Petroleum pollution has caused great harm to the natural environment, and alkanes are the main components of petroleum. Many Gram-negative bacteria can use alkanes as carbon and energy sources, which is an important strategy for oil pollution remediation. Alkane uptake is the first step for its utilization. Hence, the characterization of transport proteins is of great significance for the recovery of oil pollution and other potential applications in industrial engineering bacteria. At present, some short- and medium-chain alkane transporters have been identified, but stronger hydrophobic long-chain alkane transporters have received little attention. In this study, the broad-spectrum transporter AltL, identified in RAG-1, makes up for the lack of research on the transport of long-chain alkanes and (very) long-chain fatty acids. Meanwhile, the structural features of longer extracellular loops might be related to its unique transport function on more hydrophobic and larger substrates, indicating it is a novel type alkane transporter.

摘要

由于革兰氏阴性菌外膜脂多糖 (LPS) 的屏障作用,疏水性烷烃的摄取需要转运蛋白。然而,关于长链烷烃转运蛋白的报道很少。在这项研究中,通过比较转录组分析筛选出不动杆菌 RAG-1 中的潜在长链烷烃转运蛋白 (AltL)。生长和降解实验表明,缺失导致 RAG-1 丧失利用二十八烷的能力。为了确定 AltL 的功能,我们通过构建的烷烃检测系统和同位素转运实验测量了细胞中烷烃的存在和积累,证明了它的长链烷烃转运功能。使用不同链长的正烷烃和脂肪酸作为底物的生长实验表明,AltL 负责(非常)长链正烷烃 (C 到 C) 和脂肪酸 (C 到 C) 的运输,并且还参与中链正烷烃 (C 到 C) 的摄取。随后,我们分析了 AltL 在细菌中的分布,发现 AltL 同源物广泛存在于 -、- 和 Deltaproteobacteria 中。通过基因缺失和生长测定,还鉴定出铜绿假单胞菌中的 AltL 同源物参与长链烷烃的运输。我们还发现,在铜绿假单胞菌中过表达 增强了 C 到 C-烷烃的降解。此外,结构分析表明,AltL 具有比其他 FadL 家族成员更长的细胞外环,这可能与其与烷烃的结合有关。这些结果表明,AltL 是一种新型转运蛋白,主要负责长链正烷烃和(非常)长链脂肪酸的运输,具有广泛的应用潜力。石油污染对自然环境造成了极大的危害,而烷烃是石油的主要成分。许多革兰氏阴性菌可以将烷烃作为碳源和能源利用,这是石油污染修复的重要策略。烷烃的摄取是其利用的第一步。因此,转运蛋白的特性对于石油污染的恢复和其他潜在的工业工程菌应用具有重要意义。目前,已经鉴定出一些短链和中链烷烃转运蛋白,但对更强的疏水性长链烷烃转运蛋白关注较少。在这项研究中,在 RAG-1 中鉴定出的广谱转运蛋白 AltL 弥补了长链烷烃和(非常)长链脂肪酸转运研究的不足。同时,更长的细胞外环的结构特征可能与其对更疏水性和更大底物的独特转运功能有关,表明它是一种新型的烷烃转运蛋白。

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