State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, PR China.
College of Life Science, University of Chinese Academy of Sciences, Beijing, PR China.
Int J Syst Evol Microbiol. 2022 Sep;72(9). doi: 10.1099/ijsem.0.005326.
A novel Gram-stain-negative, short-rod-shaped, orange-pigmented bacterial strain, designated L-1-4 w-11, was isolated from Baiyang Lake in China. The strain grew at 15-35 °C (optimum 30 °C) and pH 7-8 (optimum pH 7) in TSA medium. The predominant polar lipids of strain L-1-4 w-11 were sphingoglycolipid, phosphatidylethanolamine, phosphatidylcholine, phosphatidylglycerol, diphosphatidylglycerol, one unidentified glycolipid and three unidentified lipids; the major cellular fatty acids were Cω6 and summed feature 8 (Cω7 and/or Cω6); and the major respiratory quinone was ubiquinone 10 (Q-10). Strain L-1-4 w-11 showed the highest 16S rRNA gene sequence similarity to JCM 15438 (98.3 %) and GDMCC 1.657 (98.0 %). The draft genome size of strain L-1-4 w-11 was 3.3 Mbp, and the G+C content was 67.8 mol%. Digital DNA-DNA hydridization and average nucleotide identity values between the genome sequences of strain L-1-4 w-11 and GDMCC 1.657 (76.9 and 21.0 %), JCM 15438 (76.0 and 19.9 %) and CGMCC 1.12825 (72.8 and 19.6 %) were far below the thresholds for prokaryotic conspecific assignment. With the evidence from the phylogenetic, chemotaxonomic and genotypic analyses, we propose that strain L-1-4 w-11 represents a novel species with the name sp. nov. The type strain is L-1-4 w-11 (=CGMCC 1.13572=JCM 33962).
一株从中国白洋淀中分离得到的革兰氏阴性、短杆状、橙色着色的新型细菌菌株,被命名为 L-1-4w-11。该菌株在 TSA 培养基中最适生长温度为 15-35°C(最佳温度为 30°C),最适 pH 值为 7-8(最佳 pH 值为 7)。菌株 L-1-4w-11 的主要极性脂类为神经酰胺糖脂、磷脂酰乙醇胺、磷脂酰胆碱、磷脂酰甘油、双磷脂酰甘油、一种未鉴定的糖脂和三种未鉴定的脂类;主要的细胞脂肪酸为 Cω6 和特征脂肪酸 8(Cω7 和/或 Cω6);主要的呼吸醌为泛醌 10(Q-10)。菌株 L-1-4w-11 与 JCM 15438(98.3%)和 GDMCC 1.657(98.0%)的 16S rRNA 基因序列相似性最高。菌株 L-1-4w-11 的基因组草图大小为 3.3 Mbp,GC 含量为 67.8mol%。通过数字 DNA-DNA 杂交和基因组序列之间的平均核苷酸同一性值,菌株 L-1-4w-11 与 GDMCC 1.657(76.9%和 21.0%)、JCM 15438(76.0%和 19.9%)和 CGMCC 1.12825(72.8%和 19.6%)之间的关系远低于原核同种鉴定的阈值。综合系统发育、化学分类和基因分析的证据,我们提出该菌株 L-1-4w-11 代表了一个新的种,命名为 sp. nov.。模式菌株为 L-1-4w-11(=CGMCC 1.13572=JCM 33962)。