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金属结合和寡聚化特性的 FurC (PerR) 从鱼腥藻 PCC7120: 一个额外的调控层吗?

Metal binding and oligomerization properties of FurC (PerR) from Anabaena sp. PCC7120: an additional layer of regulation?

机构信息

Departamento de Bioquímica y Biología Molecular y Celular e Instituto de Biocomputación y Física de Sistemas Complejos (Bifi), Universidad de Zaragoza, 50009-Zaragoza, Spain.

Université Grenoble Alpes, CNRS CEA, IRIG-LCBM, 38000 Grenoble, France.

出版信息

Metallomics. 2022 Oct 20;14(10). doi: 10.1093/mtomcs/mfac077.

Abstract

Metal and redox homeostasis in cyanobacteria is tightly controlled to preserve the photosynthetic machinery from mismetallation and minimize cell damage. This control is mainly taken by FUR (ferric uptake regulation) proteins. FurC works as the PerR (peroxide response) paralog in Anabaena sp. PCC7120. Despite its importance, this regulator remained poorly characterized. Although FurC lacks the typical CXXC motifs present in FUR proteins, it contains a tightly bound zinc per subunit. FurC: Zn stoichiometrically binds zinc and manganese in a second site, manganese being more efficient in the binding of FurC: Zn to its DNA target PprxA. Oligomerization analyses of FurC: Zn evidence the occurrence of different aggregates ranging from dimers to octamers. Notably, intermolecular disulfide bonds are not involved in FurC: Zn dimerization, dimer being the most reduced form of the protein. Oligomerization of dimers occurs upon oxidation of thiols by H2O2 or diamide and can be reversed by 1,4-Dithiothreitol (DTT). Irreversible inactivation of the regulator occurs by metal catalyzed oxidation promoted by ferrous iron. However, inactivation upon oxidation with H2O2 in the absence of iron was reverted by addition of DTT. Comparison of models for FurC: Zn dimers and tetramers obtained using AlphaFold Colab and SWISS-MODEL allowed to infer the residues forming both metal-binding sites and to propose the involvement of Cys86 in reversible tetramer formation. Our results decipher the existence of two levels of inactivation of FurC: Zn of Anabaena sp. PCC7120, a reversible one through disulfide-formed FurC: Zn tetramers and the irreversible metal catalyzed oxidation. This additional reversible regulation may be specific of cyanobacteria.

摘要

蓝藻中的金属和氧化还原稳态受到严格控制,以防止光合作用机器发生错配位,并最大程度地减少细胞损伤。这种控制主要由 FUR(铁摄取调节)蛋白完成。FurC 是鱼腥藻 PCC7120 中的 PerR(过氧化物应答)的旁系同源物。尽管它很重要,但这种调节剂的特征仍然很差。尽管 FurC 缺乏 FUR 蛋白中存在的典型 CXXC 基序,但它每个亚基都含有紧密结合的锌。FurC:Zn 以化学计量的方式在第二个位点结合锌和锰,而锰在 FurC:Zn 与其 DNA 靶标 PprxA 结合方面更有效。FurC:Zn 的寡聚分析表明,存在不同的聚集体,范围从二聚体到八聚体。值得注意的是,二硫键不参与 FurC:Zn 二聚体的形成,二聚体是该蛋白还原程度最高的形式。二聚体的寡聚化是通过 H2O2 或双脒氧化巯基发生的,并且可以通过 1,4-二硫苏糖醇(DTT)逆转。该调节剂的不可逆失活是由亚铁铁催化氧化促进的。然而,在没有铁的情况下用 H2O2 进行氧化导致的失活,可以通过添加 DTT 得到逆转。使用 AlphaFold Colab 和 SWISS-MODEL 对 FurC:Zn 二聚体和四聚体模型进行比较,推断出形成两个金属结合位点的残基,并提出 Cys86 参与可逆四聚体形成。我们的研究结果揭示了鱼腥藻 PCC7120 中 FurC:Zn 的两种失活水平,一种是通过二硫键形成的 FurC:Zn 四聚体的可逆失活,另一种是不可逆的金属催化氧化。这种额外的可逆调节可能是蓝藻特有的。

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