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抑制 SARS-CoV-2 的非结构蛋白 15:计算研究

Inhibition of nonstructural protein 15 of SARS-CoV-2 by golden spice: A computational insight.

机构信息

Structural Bioinformatics Lab, CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), The Himalayan Centre for High-throughput Computational Biology (HiCHiCoB, A BIC Supported by DBT), Palampur, India.

Biotechnology division, CSIR-IHBT, Palampur, India.

出版信息

Cell Biochem Funct. 2022 Dec;40(8):926-934. doi: 10.1002/cbf.3753. Epub 2022 Oct 6.

Abstract

The quick widespread of the coronavirus and speedy upsurge in the tally of cases demand the fast development of effective drugs. The uridine-directed endoribonuclease activity of nonstructural protein 15 (Nsp15) of the coronavirus is responsible for the invasion of the host immune system. Therefore, developing potential inhibitors against Nsp15 is a promising strategy. In this concern, the in silico approach can play a significant role, as it is fast and cost-effective in comparison to the trial and error approaches of experimental investigations. In this study, six turmeric derivatives (curcuminoids) were chosen for in silico analysis. The molecular interactions, pharmacokinetics, and drug-likeness of all the curcuminoids were measured. Further, the stability of Nsp15-curcuminoids complexes was appraised by employing molecular dynamics (MD) simulations and MM-PBSA approaches. All the molecules were affirmed to have strong interactions and pharmacokinetic profile. The MD simulations data stated that the Nsp15-curcuminoids complexes were stable during simulations. All the curcuminoids showed stable and high binding affinity, and these curcuminoids could be admitted as potential modulators for Nsp15 inhibition.

摘要

冠状病毒的迅速传播和病例数量的快速激增,要求快速开发有效的药物。冠状病毒的非结构蛋白 15(Nsp15)的尿嘧啶定向内切核糖核酸酶活性负责宿主免疫系统的入侵。因此,开发针对 Nsp15 的潜在抑制剂是一种有前途的策略。在这方面,计算方法可以发挥重要作用,因为与实验研究的反复试验方法相比,它既快速又具有成本效益。在这项研究中,选择了六种姜黄衍生物(姜黄素)进行计算机分析。测量了所有姜黄素的分子相互作用、药代动力学和类药性。此外,通过分子动力学(MD)模拟和 MM-PBSA 方法评估了 Nsp15-姜黄素复合物的稳定性。所有分子都被证实具有很强的相互作用和药代动力学特性。MD 模拟数据表明,Nsp15-姜黄素复合物在模拟过程中是稳定的。所有姜黄素均表现出稳定且高的结合亲和力,这些姜黄素可被认为是 Nsp15 抑制的潜在调节剂。

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