从爱尔兰土壤中分离出的酵母栎球拟酵母菌株UCD657的基因组序列草图
Draft Genome Sequence of the Yeast Torulaspora quercuum Strain UCD657, Isolated from Soil in Ireland.
作者信息
Igharo Blessing, Byrne Kevin P, Ghnewa Heytham, Davey Ryan P, Fubara Athaliah, Welc Julia, Oubihi Shafik, Moore Luke, Smith Cian, Ó Cinnéide Eoin, Bergin Sean A, Hession Conor, Wolfe Kenneth H, Butler Geraldine
机构信息
School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Dublin, Ireland.
School of Medicine, Conway Institute, University College Dublin, Dublin, Ireland.
出版信息
Microbiol Resour Announc. 2022 Nov 17;11(11):e0095222. doi: 10.1128/mra.00952-22. Epub 2022 Oct 10.
Abstract
Torulaspora quercuum is an ascomycete yeast first isolated in 2009. Here, we present the genome sequence of T. quercuum isolate UCD657, which was isolated from soil in Ireland. This genome is 10.4 Mb and was assembled into 8 chromosome-sized scaffolds of >1 Mb in size, plus a mitochondrial genome scaffold.
摘要
栎球拟酵母是一种子囊菌酵母，于2009年首次分离得到。在此，我们展示了从爱尔兰土壤中分离得到的栎球拟酵母菌株UCD657的基因组序列。该基因组大小为10.4 Mb，组装成了8个大小大于1 Mb的染色体大小的支架，外加一个线粒体基因组支架。
相似文献
1
Draft Genome Sequence of the Yeast Torulaspora quercuum Strain UCD657, Isolated from Soil in Ireland.从爱尔兰土壤中分离出的酵母栎球拟酵母菌株UCD657的基因组序列草图
Microbiol Resour Announc. 2022 Nov 17;11(11):e0095222. doi: 10.1128/mra.00952-22. Epub 2022 Oct 10.
2
Draft Genome Sequence of the Yeast Blastobotrys aristata Strain UCD613, Isolated from Soil in Ireland.从爱尔兰土壤中分离出的酵母阿氏芽殖酵母菌株UCD613的基因组序列草图
Microbiol Resour Announc. 2022 Nov 17;11(11):e0095722. doi: 10.1128/mra.00957-22. Epub 2022 Oct 12.
3
Draft genome sequence of the yeast strain UCD805, isolated from soil in Ireland.从爱尔兰土壤中分离出的酵母菌株UCD805的基因组序列草图。
Microbiol Resour Announc. 2024 Mar 12;13(3):e0107323. doi: 10.1128/mra.01073-23. Epub 2024 Feb 5.
4
Draft Genome Sequence of the Yeast Strain UCD465, Isolated from Soil in Ireland.从爱尔兰土壤中分离出的酵母菌株UCD465的基因组序列草图
Microbiol Resour Announc. 2021 Sep 30;10(39):e0073621. doi: 10.1128/MRA.00736-21.
5
Chemical composition, sensorial properties, and aroma-active compounds of ciders fermented with Hanseniaspora osmophila and Torulaspora quercuum in co- and sequential fermentations.与汉逊德巴利酵母和酒香酵母协同和顺序发酵酿造苹果酒的化学成分、感官特性和香气活性化合物。
Food Chem. 2020 Feb 15;306:125623. doi: 10.1016/j.foodchem.2019.125623. Epub 2019 Oct 3.
6
Draft Genome Sequence of a Red Basidiomycete Yeast, Symmetrospora coprosmae Strain UCD350, Isolated from Soil in Ireland.从爱尔兰土壤中分离出的红色担子菌酵母——考普罗斯马对称孢酵母菌株UCD350的基因组序列草图
Microbiol Resour Announc. 2019 Oct 31;8(44):e01256-19. doi: 10.1128/MRA.01256-19.
7
Torulaspora quercuum sp. nov. and Candida pseudohumilis sp. nov., novel yeasts from human and forest habitats.新型栎酒酵母和新型拟无梗滑酵母，来自人体和森林生境的新型酵母。
FEMS Yeast Res. 2009 Dec;9(8):1322-6. doi: 10.1111/j.1567-1364.2009.00567.x. Epub 2009 Aug 18.
8
Draft Genome Sequence of the Birch Tree Fungal Pathogen Taphrina betulina UCD315.桦树真菌病原体白桦外囊菌UCD315的基因组序列草图
Microbiol Resour Announc. 2019 Nov 27;8(48):e01255-19. doi: 10.1128/MRA.01255-19.
9
Draft Genome Sequence of the Yeast Kazachstania telluris CBS 16338 Isolated from Forest Soil in Ireland.爱尔兰森林土壤中分离出的酵母 Kazachstania telluris CBS 16338 的基因组草图序列。
Mycopathologia. 2020 Jun;185(3):587-590. doi: 10.1007/s11046-020-00449-6. Epub 2020 Apr 30.
10
Draft Genome Sequence of the Yeast Nadsonia starkeyi-henricii UCD142, Isolated from Forest Soil in Ireland.从爱尔兰森林土壤中分离出的酵母斯达奇酵母-亨利克酵母UCD142的基因组序列草图
Genome Announc. 2018 Jun 21;6(25):e00549-18. doi: 10.1128/genomeA.00549-18.
本文引用的文献
1
A glimpse at an early stage of microbe domestication revealed in the variable genome of Torulaspora delbrueckii, an emergent industrial yeast.在新兴工业酵母德巴利酵母（Torulaspora delbrueckii）的可变基因组中揭示了微生物驯化早期阶段的一瞥。
Mol Ecol. 2023 May;32(10):2396-2412. doi: 10.1111/mec.16428. Epub 2022 Mar 28.
2
Polishing the Oxford Nanopore long-read assemblies of bacterial pathogens with Illumina short reads to improve genomic analyses.用 Illumina 短读序列对牛津纳米孔长读序列组装的细菌病原体进行打磨，以改进基因组分析。
Genomics. 2021 May;113(3):1366-1377. doi: 10.1016/j.ygeno.2021.03.018. Epub 2021 Mar 11.
3
NanoPack: visualizing and processing long-read sequencing data.NanoPack：可视化和处理长读测序数据。
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
4
SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data.SOAPnuke：一种基于 MapReduce 加速的高通量测序数据集成质量控制和预处理软件。
Gigascience. 2018 Jan 1;7(1):1-6. doi: 10.1093/gigascience/gix120.
5
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
6
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.Skewer：一种用于新一代测序双端读段的快速且准确的接头修剪工具。
BMC Bioinformatics. 2014 Jun 12;15:182. doi: 10.1186/1471-2105-15-182.
7
Preparation of genomic DNA from Saccharomyces cerevisiae.酿酒酵母基因组DNA的制备。
Methods Enzymol. 2013;529:153-60. doi: 10.1016/B978-0-12-418687-3.00012-4.
8
Torulaspora quercuum sp. nov. and Candida pseudohumilis sp. nov., novel yeasts from human and forest habitats.新型栎酒酵母和新型拟无梗滑酵母，来自人体和森林生境的新型酵母。
FEMS Yeast Res. 2009 Dec;9(8):1322-6. doi: 10.1111/j.1567-1364.2009.00567.x. Epub 2009 Aug 18.
Zotero 插件