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Mol Ecol. 2023 May;32(10):2396-2412. doi: 10.1111/mec.16428. Epub 2022 Mar 28.
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Polishing the Oxford Nanopore long-read assemblies of bacterial pathogens with Illumina short reads to improve genomic analyses.用 Illumina 短读序列对牛津纳米孔长读序列组装的细菌病原体进行打磨，以改进基因组分析。
Genomics. 2021 May;113(3):1366-1377. doi: 10.1016/j.ygeno.2021.03.018. Epub 2021 Mar 11.
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NanoPack: visualizing and processing long-read sequencing data.NanoPack：可视化和处理长读测序数据。
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
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SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data.SOAPnuke：一种基于 MapReduce 加速的高通量测序数据集成质量控制和预处理软件。
Gigascience. 2018 Jan 1;7(1):1-6. doi: 10.1093/gigascience/gix120.
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Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
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BMC Bioinformatics. 2014 Jun 12;15:182. doi: 10.1186/1471-2105-15-182.
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Preparation of genomic DNA from Saccharomyces cerevisiae.酿酒酵母基因组DNA的制备。
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8
Torulaspora quercuum sp. nov. and Candida pseudohumilis sp. nov., novel yeasts from human and forest habitats.新型栎酒酵母和新型拟无梗滑酵母，来自人体和森林生境的新型酵母。
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从爱尔兰土壤中分离出的酵母栎球拟酵母菌株UCD657的基因组序列草图

Draft Genome Sequence of the Yeast Torulaspora quercuum Strain UCD657, Isolated from Soil in Ireland.

作者信息

Igharo Blessing, Byrne Kevin P, Ghnewa Heytham, Davey Ryan P, Fubara Athaliah, Welc Julia, Oubihi Shafik, Moore Luke, Smith Cian, Ó Cinnéide Eoin, Bergin Sean A, Hession Conor, Wolfe Kenneth H, Butler Geraldine

机构信息

School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Dublin, Ireland.

School of Medicine, Conway Institute, University College Dublin, Dublin, Ireland.

出版信息

Microbiol Resour Announc. 2022 Nov 17;11(11):e0095222. doi: 10.1128/mra.00952-22. Epub 2022 Oct 10.

DOI:10.1128/mra.00952-22
PMID:36214680
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9670891/
Abstract

Torulaspora quercuum is an ascomycete yeast first isolated in 2009. Here, we present the genome sequence of T. quercuum isolate UCD657, which was isolated from soil in Ireland. This genome is 10.4 Mb and was assembled into 8 chromosome-sized scaffolds of >1 Mb in size, plus a mitochondrial genome scaffold.

摘要

栎球拟酵母是一种子囊菌酵母，于2009年首次分离得到。在此，我们展示了从爱尔兰土壤中分离得到的栎球拟酵母菌株UCD657的基因组序列。该基因组大小为10.4 Mb，组装成了8个大小大于1 Mb的染色体大小的支架，外加一个线粒体基因组支架。