NIHR Global Health Research Unit on Mucosal Pathogens, Division of Infection and Immunity, University College London, London WC1E 6BT, UK.
Clinical Sciences Department, Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK.
Int J Mol Sci. 2022 Oct 6;23(19):11879. doi: 10.3390/ijms231911879.
To improve the storage and transport of clinical specimens for the diagnosis of Neisseria meningitidis (Nm) infections in resource-limited settings, we have evaluated the performance of dried blood spot (DBS) and dried cerebrospinal fluid spot (DCS) assays. DBS and DCS were prepared on filter paper from liquid specimens previously tested for Nm in the United Kingdom. Nm was detected and genogrouped by real-time PCR performed on crude genomic DNA extracted from the DBS (n = 226) and DCS (n = 226) specimens. Targeted whole-genome sequencing was performed on a subset of specimens, DBS (n = 4) and DCS (n = 6). The overall agreement between the analysis of liquid and dried specimens was (94.2%; 95% CI 90.8−96.7) for blood and (96.4%; 95% CI 93.5−98.0) for cerebrospinal fluid. Relative to liquid specimens as the reference, the DBS and DCS assays had sensitivities of (89.1%; 95% CI 82.7−93.8) and (94.2%; 95% CI 88.9−97.5), respectively, and both assays had specificities above 98%. A genogroup was identified by dried specimen analysis for 81.9% of the confirmed meningococcal infections. Near full-length Nm genome sequences (>86%) were obtained for all ten specimens tested which allowed determination of the sequence type, clonal complex, presence of antimicrobial resistance and other meningococcal genotyping. Dried blood and CSF filter spot assays offer a practical alternative to liquid specimens for the molecular and genomic characterisation of invasive meningococcal diseases in low-resource settings.
为了改善在资源有限的环境下对脑膜炎奈瑟菌(Nm)感染的临床标本的储存和运输,我们评估了干血斑(DBS)和干脑脊液斑(DCS)检测的性能。从英国先前检测过 Nm 的液体标本制备的滤纸上制备 DBS 和 DCS。通过从 DBS(n=226)和 DCS(n=226)标本中提取的粗基因组 DNA 进行实时 PCR 检测并对 Nm 进行基因分组。对部分标本(DBS(n=4)和 DCS(n=6))进行靶向全基因组测序。液体和干燥标本分析之间的总体一致性为血液(94.2%;95%CI 90.8−96.7)和脑脊液(96.4%;95%CI 93.5−98.0)。相对于液体标本作为参考,DBS 和 DCS 检测的敏感性分别为(89.1%;95%CI 82.7−93.8)和(94.2%;95%CI 88.9−97.5),两种检测的特异性均高于 98%。通过干燥标本分析确定了 81.9%的确诊脑膜炎奈瑟菌感染的基因群。对所有 10 个测试标本均获得了接近全长 Nm 基因组序列(>86%),这允许确定序列类型、克隆复合物、存在抗生素耐药性和其他脑膜炎奈瑟菌基因分型。干血和 CSF 滤片检测为资源有限环境中侵袭性脑膜炎奈瑟菌病的分子和基因组特征提供了一种实用的液体标本替代方法。