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污水中 SARS-CoV-2 生物标志物与估计感染率之间的区域和时间差异——来自长期监测的见解。

Regional and temporal differences in the relation between SARS-CoV-2 biomarkers in wastewater and estimated infection prevalence - Insights from long-term surveillance.

机构信息

Institute of Urban and Industrial Water Management, Technische Universität Dresden, Helmholtzstrasse 10, 01069 Dresden, Germany.

Institute of Medical Microbiology and Virology, University Hospital Carl Gustav Carus, Technische Universität Dresden, Fetscherstrasse 74, 01307 Dresden, Germany.

出版信息

Sci Total Environ. 2023 Jan 20;857(Pt 2):159358. doi: 10.1016/j.scitotenv.2022.159358. Epub 2022 Oct 12.

DOI:10.1016/j.scitotenv.2022.159358
PMID:36240928
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9554318/
Abstract

Wastewater-based epidemiology provides a conceptual framework for the evaluation of the prevalence of public health related biomarkers. In the context of the Coronavirus disease-2019, wastewater monitoring emerged as a complementary tool for epidemic management. In this study, we evaluated data from six wastewater treatment plants in the region of Saxony, Germany. The study period lasted from February to December 2021 and covered the third and fourth regional epidemic waves. We collected 1065 daily composite samples and analyzed SARS-CoV-2 RNA concentrations using reverse transcription-quantitative polymerase chain reaction (RT-qPCR). Regression models quantify the relation between RNA concentrations and disease prevalence. We demonstrated that the relation is site and time specific. Median loads per diagnosed case differed by a factor of 3-4 among sites during both waves and were on average 45 % higher during the third wave. In most cases, log-log-transformed data achieved better regression performance than non-transformed data and local calibration outperformed global models for all sites. The inclusion of lag/lead time, discharge and detection probability improved model performance in all cases significantly, but the importance of these components was also site and time specific. In all cases, models with lag/lead time and log-log-transformed data obtained satisfactory goodness-of-fit with adjusted coefficients of determination higher than 0.5. Back-estimation of testing efficiency from wastewater data confirmed state-wide prevalence estimation from individual testing statistics, but revealed pronounced differences throughout the epidemic waves and among the different sites.

摘要

基于污水的流行病学为评估与公共卫生相关的生物标志物的流行情况提供了一个概念框架。在 2019 年冠状病毒病的背景下,污水监测作为一种补充的流行管理工具出现了。在这项研究中,我们评估了德国萨克森地区六个污水处理厂的数据。研究期间为 2021 年 2 月至 12 月,涵盖了第三次和第四次区域流行波。我们收集了 1065 份每日综合样本,并使用逆转录定量聚合酶链反应(RT-qPCR)分析了 SARS-CoV-2 RNA 浓度。回归模型量化了 RNA 浓度与疾病流行之间的关系。我们证明这种关系是特定于地点和时间的。在两次流行波期间,各地点之间每例确诊病例的中位数负荷相差 3-4 倍,在第三次流行波期间平均高出 45%。在大多数情况下,对数转换数据比非转换数据的回归性能更好,而且对于所有地点,局部校准都优于全局模型。在所有情况下,包括滞后/领先时间、排放量和检测概率都显著提高了模型性能,但这些成分的重要性也是特定于地点和时间的。在所有情况下,带有滞后/领先时间和对数转换数据的模型都获得了令人满意的拟合优度,调整后的确定系数高于 0.5。从污水数据反推检测效率证实了从个体检测统计数据推断全州流行情况,但在整个流行波期间和不同地点之间都显示出明显的差异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/2963366b7122/gr6_lrg.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/8be89279ef83/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/96316db4ba44/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/91a19f34d497/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/2e321511fd89/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/39ef13098d00/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/2963366b7122/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/21656a971f18/ga1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/8be89279ef83/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/96316db4ba44/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/91a19f34d497/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/2e321511fd89/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/39ef13098d00/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5f2/9554318/2963366b7122/gr6_lrg.jpg

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