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一个用于预防和减轻空气传播病原体引起的大流行的综合模拟框架。

An integrated simulation framework for the prevention and mitigation of pandemics caused by airborne pathogens.

作者信息

Chondros Christos, Nikolopoulos Stavros D, Polenakis Iosif

机构信息

Department of Computer Science and Engineering, University of Ioannina, 45100 Ioannina, Greece.

出版信息

Netw Model Anal Health Inform Bioinform. 2022;11(1):42. doi: 10.1007/s13721-022-00385-z. Epub 2022 Oct 18.

DOI:10.1007/s13721-022-00385-z
PMID:36277296
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9579666/
Abstract

In this work, we developed an integrated simulation framework for pandemic prevention and mitigation of pandemics caused by airborne pathogens, incorporating three sub-models, namely the spatial model, the mobility model, and the propagation model, to create a realistic simulation environment for the evaluation of the effectiveness of different countermeasures on the epidemic dynamics. The spatial model converts images of real cities obtained from Google Maps into undirected weighted graphs that capture the spatial arrangement of the streets utilized next for the mobility of individuals. The mobility model implements a stochastic agent-based approach, developed to assign specific routes to individuals moving in the city, through the use of stochastic processes, utilizing the weights of the underlying graph to deploy shortest path algorithms. The propagation model implements both the epidemiological model and the physical substance of the transmission of an airborne pathogen (in our approach, we investigate the transmission parameters of SARS-CoV-2). The deployment of a set of countermeasures was investigated in reducing the spread of the pathogen, where, through a series of repetitive simulation experiments, we evaluated the effectiveness of each countermeasure in pandemic prevention.

摘要

在这项工作中,我们开发了一个综合模拟框架,用于预防和减轻由空气传播病原体引起的大流行,该框架包含三个子模型,即空间模型、移动性模型和传播模型,以创建一个逼真的模拟环境,用于评估不同应对措施对疫情动态的有效性。空间模型将从谷歌地图获取的真实城市图像转换为无向加权图,该图捕捉了接下来用于个体移动的街道的空间布局。移动性模型采用基于随机代理的方法,通过使用随机过程为在城市中移动的个体分配特定路线,利用底层图的权重来部署最短路径算法。传播模型同时实现了流行病学模型和空气传播病原体传播的物理实质(在我们的方法中,我们研究了SARS-CoV-2的传播参数)。我们研究了一系列应对措施在减少病原体传播方面的部署情况,通过一系列重复的模拟实验,我们评估了每种应对措施在大流行预防中的有效性。

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