Sayan Murat, Arikan Ayse, Isbilen Murat
Kocaeli University, Research & Education Hospital, PCR Unit, Kocaeli 41380, Izmit, Turkey.
Near East University, DESAM Research Institute, Nicosia 99138, Northern Cyprus, Mersin 10, Turkey.
Can J Infect Dis Med Microbiol. 2022 Oct 15;2022:4677720. doi: 10.1155/2022/4677720. eCollection 2022.
The diagnosis of new variants and monitoring their potential effects on diagnosis, therapeutics, and vaccines by genomic sequencing is essential to manage global public crises. In the current study, spike-genome next-generation sequencing was generated from 492 SARS-CoV-2 isolates to evaluate the mutations in Turkey from April 2021 to February 2022. The variant analysis was performed using (Coronavirus Antiviral and Resistance Database (CoV-RDB) by Stanford University). We revealed that the lineages Alpha (B.1.1.7), Beta (B.1.351), Delta (B.1.617.2), Eta (B.1.525), variant of interest (VOI), lota (B.1.526), Zeta (P.2), Omicron (B.1.1.529), and Omicron BA.1 (B.1.1.529.1) were in the circulation in Turkey during the given period. The most common lineages were B.1.1.7, B.1.617.2, B.1.1.529, and B.1.1.529.1 SARS-CoV-2 variant circulation in Turkey seems highly heterogenetic; however, quite similar to the global epidemiologic analysis. The existence of globally circulating variants in the same chronological order in Turkey can be a guide for precautions, treatment, and vaccine options to be taken in the future.
通过基因组测序诊断新变种并监测其对诊断、治疗和疫苗的潜在影响对于应对全球公共危机至关重要。在本研究中,对492株严重急性呼吸综合征冠状病毒2(SARS-CoV-2)分离株进行了刺突基因组下一代测序,以评估2021年4月至2022年2月土耳其的突变情况。使用斯坦福大学的冠状病毒抗病毒和耐药数据库(CoV-RDB)进行变异分析。我们发现,在给定时期内,阿尔法(B.1.1.7)、贝塔(B.1.351)、德尔塔(B.1.617.2)、伊塔(B.1.525)、感兴趣变种(VOI)、洛塔(B.1.526)、泽塔(P.2)、奥密克戎(B.1.1.529)和奥密克戎BA.1(B.1.1.529.1)谱系在土耳其流行。最常见的谱系是B.1.1.7、B.1.617.2、B.1.1.529和B.1.1.529.1。SARS-CoV-2变种在土耳其的流行似乎高度异质;然而,与全球流行病学分析非常相似。土耳其按相同时间顺序存在全球流行的变种可为未来采取的预防措施、治疗方法和疫苗选择提供指导。