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Complete Genome Sequences of Bacteriophages Annihilus, TonyStarch, Thiqqums, CricKo, ClubPenguin, RosaAsantewaa, and PherryCruz.

作者信息

Park Yvette Genie, McCarthy Gillian Faith, Mustafa Hadeeqa, Feild Gemma M, Puram Snigdha, Younes Hager Aly, Imam Danyah, Erill Ivan, Caruso Steven M

机构信息

Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, Maryland, USA.

出版信息

Microbiol Resour Announc. 2022 Nov 17;11(11):e0092222. doi: 10.1128/mra.00922-22. Epub 2022 Oct 26.

DOI:10.1128/mra.00922-22
PMID:36286992
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9671017/
Abstract

Seven siphoviruses were isolated from soil using hosts. Their genome sequences ranged from 42,730 to 57,624 bp long and had a GC content of approximately 60%. Based on their gene content similarity to actinobacteriophages, all seven phages were assigned to cluster BI. For several of these phages, multiple ribosomal frameshifts were identified.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cc5/9671017/02ece46055cd/mra.00922-22-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cc5/9671017/02ece46055cd/mra.00922-22-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2cc5/9671017/02ece46055cd/mra.00922-22-f001.jpg

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本文引用的文献

1
Actinobacteriophages: Genomics, Dynamics, and Applications.放线菌噬菌体:基因组学、动态学与应用。
Annu Rev Virol. 2020 Sep 29;7(1):37-61. doi: 10.1146/annurev-virology-122019-070009.
2
tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.tRNAscan-SE:在基因组序列中搜索tRNA基因。
Methods Mol Biol. 2019;1962:1-14. doi: 10.1007/978-1-4939-9173-0_1.
3
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core.一个完全重新实现的 MPI 生物信息学工具包,其核心是一个新的 HHpred 服务器。
J Mol Biol. 2018 Jul 20;430(15):2237-2243. doi: 10.1016/j.jmb.2017.12.007. Epub 2017 Dec 16.
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Annotation of Bacteriophage Genome Sequences Using DNA Master: An Overview.使用DNA Master对噬菌体基因组序列进行注释:概述
Methods Mol Biol. 2018;1681:217-229. doi: 10.1007/978-1-4939-7343-9_16.
5
Bacteriophages of spp. Display a Spectrum of Diversity and Genetic Relationships.[细菌名称]属的噬菌体表现出多样的谱系和遗传关系。 (注:原文中“spp.”指代不明,这里用[细菌名称]属来表示需根据实际指代细菌来准确翻译)
mBio. 2017 Aug 15;8(4):e01069-17. doi: 10.1128/mBio.01069-17.
6
PhagesDB: the actinobacteriophage database.噬菌体数据库:放线菌噬菌体数据库。
Bioinformatics. 2017 Mar 1;33(5):784-786. doi: 10.1093/bioinformatics/btw711.
7
Growth of streptomycetes in soil and their impact on bioremediation.链霉菌在土壤中的生长及其对生物修复的影响。
J Hazard Mater. 2014 Feb 28;267:128-35. doi: 10.1016/j.jhazmat.2013.12.055. Epub 2014 Jan 3.
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Phamerator: a bioinformatic tool for comparative bacteriophage genomics.Phamerator:一种用于比较噬菌体基因组学的生物信息学工具。
BMC Bioinformatics. 2011 Oct 12;12:395. doi: 10.1186/1471-2105-12-395.
9
Interactions and biocontrol of pathogenic Streptomyces strains co-occurring in potato scab lesions.在马铃薯疮痂病斑中共生的致病性链霉菌的相互作用和生物防治。
J Appl Microbiol. 2009 Jan;106(1):199-212. doi: 10.1111/j.1365-2672.2008.03992.x. Epub 2008 Nov 29.
10
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.