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濒危海洋物种遗传模式的检测受到小样本量的影响。

Detection of Genetic Patterns in Endangered Marine Species Is Affected by Small Sample Sizes.

作者信息

Cossu Piero, Mura Laura, Dedola Gian Luca, Lai Tiziana, Sanna Daria, Scarpa Fabio, Azzena Ilenia, Fois Nicola, Casu Marco

机构信息

Department of Sciences for Nature and Environmental Resources, University of Sassari, 07100 Sassari, Italy.

Department of Veterinary Medicine, University of Sassari, 07100 Sassari, Italy.

出版信息

Animals (Basel). 2022 Oct 14;12(20):2763. doi: 10.3390/ani12202763.

Abstract

Knowledge of Genetic diversity and its spatial distribution is crucial to improve conservation plans for endangered species. Genetic tools help ensure species' long-term persistence by unraveling connectivity patterns and evolutionary trajectories of populations. Here, microsatellite genotypes of individuals from populations of are used to assess the effect of sample size on metrics of within-and between-population genetic diversity by combining empirical and simulated data. Within-population metrics are slightly to moderately affected by small sample size, albeit the magnitude of the bias is proportional to the effective population size and gene flow. The power of detecting genetic differentiation among populations increases with sample size, albeit the gain of increasing the number of sampled individuals tends to be negligible between 30 and 50. Our results line up with those of previous studies and highlight that small sample sizes are not always a hindrance to investigating genetic patterns in endangered marine species. Caution is needed in interpreting genetic patterns based on small sample sizes when the observed genetic differentiation is weak. This study also highlights the importance of carrying out genetic monitoring in seemingly well-preserved but potentially isolated populations.

摘要

了解遗传多样性及其空间分布对于改进濒危物种的保护计划至关重要。遗传工具通过揭示种群的连通模式和进化轨迹,有助于确保物种的长期存续。在此,通过结合实证数据和模拟数据,利用来自[种群名称未给出]种群个体的微卫星基因型来评估样本量对种群内和种群间遗传多样性指标的影响。尽管偏差的大小与有效种群大小和基因流成正比,但小样本量对种群内指标有轻微到中等程度的影响。检测种群间遗传分化的能力随样本量增加而增强,尽管在30至50个个体之间增加采样个体数量的增益往往可以忽略不计。我们的结果与先前研究一致,并强调小样本量并不总是阻碍对濒危海洋物种遗传模式的研究。当观察到的遗传分化较弱时,在基于小样本量解释遗传模式时需要谨慎。这项研究还强调了在看似保存良好但可能隔离的种群中进行遗传监测的重要性。

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