• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

病毒小终止酶:保守生物学功能的分化结构框架。

Viral Small Terminase: A Divergent Structural Framework for a Conserved Biological Function.

机构信息

Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, PA 19107, USA.

出版信息

Viruses. 2022 Oct 8;14(10):2215. doi: 10.3390/v14102215.

DOI:10.3390/v14102215
PMID:36298770
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9611059/
Abstract

The genome packaging motor of bacteriophages and herpesviruses is built by two terminase subunits, known as large (TerL) and small (TerS), both essential for viral genome packaging. TerL structure, composition, and assembly to an empty capsid, as well as the mechanisms of ATP-dependent DNA packaging, have been studied in depth, shedding light on the chemo-mechanical coupling between ATP hydrolysis and DNA translocation. Instead, significantly less is known about the small terminase subunit, TerS, which is dispensable or even inhibitory in vitro, but essential in vivo. By taking advantage of the recent revolution in cryo-electron microscopy (cryo-EM) and building upon a wealth of crystallographic structures of phage TerSs, in this review, we take an inventory of known TerSs studied to date. Our analysis suggests that TerS evolved and diversified into a flexible molecular framework that can conserve biological function with minimal sequence and quaternary structure conservation to fit different packaging strategies and environmental conditions.

摘要

噬菌体和疱疹病毒的基因组包装马达由两个末端酶亚基组成,分别称为大(TerL)和小(TerS),它们都是病毒基因组包装所必需的。TerL 的结构、组成和空衣壳的组装,以及 ATP 依赖性 DNA 包装的机制,已经得到了深入研究,揭示了 ATP 水解和 DNA 转位之间的化学机械偶联。相比之下,关于小末端酶亚基 TerS 的了解要少得多,TerS 在体外是可有可无的,甚至是抑制性的,但在体内却是必需的。本综述利用最近 cryo-electron microscopy (cryo-EM) 的革命成果,并基于大量噬菌体 TerSs 的晶体结构,对迄今为止研究过的已知 TerSs 进行了盘点。我们的分析表明,TerS 进化并多样化为一个灵活的分子框架,可以在最小的序列和四级结构保守的情况下保留生物功能,以适应不同的包装策略和环境条件。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/cfefe65d0195/viruses-14-02215-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/17fd878c9e87/viruses-14-02215-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/fbec3e2138f8/viruses-14-02215-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/3480ddc1300f/viruses-14-02215-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/d295e436d274/viruses-14-02215-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/0608ec979156/viruses-14-02215-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/cfefe65d0195/viruses-14-02215-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/17fd878c9e87/viruses-14-02215-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/fbec3e2138f8/viruses-14-02215-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/3480ddc1300f/viruses-14-02215-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/d295e436d274/viruses-14-02215-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/0608ec979156/viruses-14-02215-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b61/9611059/cfefe65d0195/viruses-14-02215-g006.jpg

相似文献

1
Viral Small Terminase: A Divergent Structural Framework for a Conserved Biological Function.病毒小终止酶:保守生物学功能的分化结构框架。
Viruses. 2022 Oct 8;14(10):2215. doi: 10.3390/v14102215.
2
A thermophilic phage uses a small terminase protein with a fixed helix-turn-helix geometry.一种嗜热噬菌体使用具有固定螺旋-转角-螺旋几何形状的小终止酶蛋白。
J Biol Chem. 2020 Mar 20;295(12):3783-3793. doi: 10.1074/jbc.RA119.012224. Epub 2020 Feb 3.
3
Strategies for purification of the bacteriophage HK97 small and large terminase subunits that yield pure and homogeneous samples that are functional.用于纯化噬菌体HK97小和大末端酶亚基的策略,这些策略可产生具有功能的纯净且均一的样品。
Protein Expr Purif. 2019 Aug;160:45-55. doi: 10.1016/j.pep.2019.03.017. Epub 2019 Apr 4.
4
The coevolution of large and small terminases of bacteriophages is a result of purifying selection leading to phenotypic stabilization.噬菌体大亚基和小亚基的协同进化是由纯化选择导致表型稳定的结果。
Virology. 2021 Dec;564:13-25. doi: 10.1016/j.virol.2021.09.004. Epub 2021 Sep 21.
5
The bacteriophage DNA packaging machine.噬菌体 DNA 包装机器。
Adv Exp Med Biol. 2012;726:489-509. doi: 10.1007/978-1-4614-0980-9_22.
6
Nucleotides regulate the conformational state of the small terminase subunit from bacteriophage lambda: implications for the assembly of a viral genome-packaging motor.核苷酸调节来自噬菌体λ的小末端酶亚基的构象状态:对病毒基因组包装马达组装的影响。
Biochemistry. 2005 Jul 19;44(28):9645-56. doi: 10.1021/bi050333e.
7
Viral Genomic DNA Packaging Machinery.病毒基因组 DNA 包装机制。
Subcell Biochem. 2024;104:181-205. doi: 10.1007/978-3-031-58843-3_9.
8
Genetics of critical contacts and clashes in the DNA packaging specificities of bacteriophages λ and 21.噬菌体λ和21的DNA包装特异性中的关键接触和冲突的遗传学
Virology. 2015 Feb;476:115-123. doi: 10.1016/j.virol.2014.11.028. Epub 2014 Dec 24.
9
Structural basis for DNA recognition by a viral genome-packaging machine.病毒基因组包装机器识别DNA的结构基础。
Proc Natl Acad Sci U S A. 2024 Aug 13;121(33):e2406138121. doi: 10.1073/pnas.2406138121. Epub 2024 Aug 8.
10
Exclusion of small terminase mediated DNA threading models for genome packaging in bacteriophage T4.排除噬菌体T4中用于基因组包装的小末端酶介导的DNA穿线模型。
Nucleic Acids Res. 2016 May 19;44(9):4425-39. doi: 10.1093/nar/gkw184. Epub 2016 Mar 16.

引用本文的文献

1
High-resolution Cryo-EM Analysis of the Therapeutic Pseudomonas Phage Pa223.治疗性假单胞菌噬菌体Pa223的高分辨率冷冻电镜分析
J Mol Biol. 2025 Aug 12;437(21):169386. doi: 10.1016/j.jmb.2025.169386.
2
Isolation and characterization of bacteriophages with lytic activity against multidrug-resistant non-typhoidal Salmonella from Nairobi City county, Kenya.从肯尼亚内罗毕市县分离并鉴定对多重耐药非伤寒沙门氏菌具有裂解活性的噬菌体
BMC Infect Dis. 2025 Jul 24;25(1):940. doi: 10.1186/s12879-025-11325-3.
3
Treatment of Infections with T4-Related Bacteriophages Belonging to Class : Selecting Phage on the Basis of Their Generalized Transduction Capability.

本文引用的文献

1
Terminase Subunits from the Pseudomonas-Phage E217.来自假单胞菌噬菌体 E217 的终止酶亚基。
J Mol Biol. 2022 Oct 30;434(20):167799. doi: 10.1016/j.jmb.2022.167799. Epub 2022 Aug 22.
2
Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system.环状 ATP 酶包装典型病毒系统 DNA 的结构基础。
Nucleic Acids Res. 2022 Aug 26;50(15):8719-8732. doi: 10.1093/nar/gkac647.
3
Search and sequence analysis tools services from EMBL-EBI in 2022.2022 年 EMBL-EBI 的搜索和序列分析工具服务。
属于类的T4相关噬菌体感染的治疗:基于其广义转导能力选择噬菌体
Viruses. 2025 May 14;17(5):701. doi: 10.3390/v17050701.
4
Characterization and Genomic Analysis of a Lytic Vibriophage vB_VneS_S3 of Infecting Vibrio neocaledonicus.一株感染新喀里多尼亚弧菌的裂解性弧菌噬菌体vB_VneS_S3的特性分析与基因组分析
Curr Microbiol. 2025 Apr 19;82(6):251. doi: 10.1007/s00284-025-04239-5.
5
Variable Assembly and Procapsid Binding of Bacteriophage P22 Terminase Subunits in Solution.噬菌体P22末端酶亚基在溶液中的可变组装及原衣壳结合
Pathogens. 2024 Dec 3;13(12):1066. doi: 10.3390/pathogens13121066.
6
Nucleic Acid Packaging in Viruses.病毒中的核酸包装
Subcell Biochem. 2024;105:469-502. doi: 10.1007/978-3-031-65187-8_13.
7
A phage satellite manipulates the viral DNA packaging motor to inhibit phage and promote satellite spread.噬菌体卫星通过操纵病毒 DNA 包装马达来抑制噬菌体并促进卫星传播。
Nucleic Acids Res. 2024 Sep 23;52(17):10431-10446. doi: 10.1093/nar/gkae675.
8
Structural basis for DNA recognition by a viral genome-packaging machine.病毒基因组包装机器识别DNA的结构基础。
Proc Natl Acad Sci U S A. 2024 Aug 13;121(33):e2406138121. doi: 10.1073/pnas.2406138121. Epub 2024 Aug 8.
9
A novel flavobacterial phage abundant during green tide, representing a new viral family, .一种在绿潮期间丰富的新型黄杆菌噬菌体,代表了一个新的病毒科。
Appl Environ Microbiol. 2024 Jul 24;90(7):e0036724. doi: 10.1128/aem.00367-24. Epub 2024 Jul 2.
10
A phage satellite manipulates the viral DNA packaging motor to inhibit phage and promote satellite spread.一种噬菌体卫星操纵病毒DNA包装马达以抑制噬菌体并促进卫星传播。
bioRxiv. 2024 Apr 22:2024.04.22.590561. doi: 10.1101/2024.04.22.590561.
Nucleic Acids Res. 2022 Jul 5;50(W1):W276-W279. doi: 10.1093/nar/gkac240.
4
Cryo-EM Structure of a Kinetically Trapped Dodecameric Portal Protein from the Pseudomonas-phage PaP3.冷冻电镜结构解析一种来自假单胞菌噬菌体 PaP3 的动力学捕获十二聚体门户蛋白
J Mol Biol. 2022 May 15;434(9):167537. doi: 10.1016/j.jmb.2022.167537. Epub 2022 Mar 9.
5
A viral genome packaging ring-ATPase is a flexibly coordinated pentamer.病毒基因组包装环-ATP 酶是一个灵活协调的五聚体。
Nat Commun. 2021 Nov 12;12(1):6548. doi: 10.1038/s41467-021-26800-z.
6
Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor.病毒基因组包装马达中力的产生、传递和协调的原子基础。
Nucleic Acids Res. 2021 Jun 21;49(11):6474-6488. doi: 10.1093/nar/gkab372.
7
A viral genome packaging motor transitions between cyclic and helical symmetry to translocate dsDNA.病毒基因组包装马达在循环和螺旋对称之间转换,以转位 dsDNA。
Sci Adv. 2021 May 7;7(19). doi: 10.1126/sciadv.abc1955. Print 2021 May.
8
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation.交互式生命树 (iTOL) v5:一个用于显示和注释系统发育树的在线工具。
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296. doi: 10.1093/nar/gkab301.
9
Biophysical analysis of Pseudomonas-phage PaP3 small terminase suggests a mechanism for sequence-specific DNA-binding by lateral interdigitation.假单胞菌噬菌体 PaP3 小终止酶的生物物理分析表明,通过横向交错实现序列特异性 DNA 结合的机制。
Nucleic Acids Res. 2020 Nov 18;48(20):11721-11736. doi: 10.1093/nar/gkaa866.
10
Architecture of the herpesvirus genome-packaging complex and implications for DNA translocation.疱疹病毒基因组包装复合物的结构及其对 DNA 易位的影响。
Protein Cell. 2020 May;11(5):339-351. doi: 10.1007/s13238-020-00710-0. Epub 2020 Apr 23.