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FerrDb V2:铁死亡调控因子和铁死亡疾病关联的人工 curated 数据库更新。

FerrDb V2: update of the manually curated database of ferroptosis regulators and ferroptosis-disease associations.

机构信息

Research Institute, The Affiliated Brain Hospital of Guangzhou Medical University, Guangzhou 510370, China.

Guangdong Engineering Technology Research Center for Translational Medicine of Mental Disorders, Guangzhou 510370, China.

出版信息

Nucleic Acids Res. 2023 Jan 6;51(D1):D571-D582. doi: 10.1093/nar/gkac935.


DOI:10.1093/nar/gkac935
PMID:36305834
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9825716/
Abstract

Ferroptosis is a mode of regulated cell death characterized by iron-dependent accumulation of lipid peroxidation. It is closely linked to the pathophysiological processes in many diseases. Since our publication of the first ferroptosis database in 2020 (FerrDb V1), many new findings have been published. To keep up with the rapid progress in ferroptosis research and to provide timely and high-quality data, here we present the successor, FerrDb V2. It contains 1001 ferroptosis regulators and 143 ferroptosis-disease associations manually curated from 3288 articles. Specifically, there are 621 gene regulators, of which 264 are drivers, 238 are suppressors, 9 are markers, and 110 are unclassified genes; and there are 380 substance regulators, with 201 inducers and 179 inhibitors. Compared to FerrDb V1, curated articles increase by >300%, ferroptosis regulators increase by 175%, and ferroptosis-disease associations increase by 50.5%. Circular RNA and pseudogene are novel regulators in FerrDb V2, and the percentage of non-coding RNA increases from 7.3% to 13.6%. External gene-related data were integrated, enabling thought-provoking and gene-oriented analysis in FerrDb V2. In conclusion, FerrDb V2 will help to acquire deeper insights into ferroptosis. FerrDb V2 is freely accessible at http://www.zhounan.org/ferrdb/.

摘要

铁死亡是一种受调控的细胞死亡方式,其特征是铁依赖性脂质过氧化的积累。它与许多疾病的病理生理过程密切相关。自 2020 年我们发表第一个铁死亡数据库(FerrDb V1)以来,已经发表了许多新的发现。为了跟上铁死亡研究的快速发展,并提供及时和高质量的数据,我们在此呈现它的继承者 FerrDb V2。它包含 1001 种铁死亡调节剂和 143 种铁死亡-疾病关联,这些都是从 3288 篇文章中手动整理出来的。具体来说,有 621 种基因调节剂,其中 264 种是驱动因子,238 种是抑制因子,9 种是标记物,110 种是未分类的基因;还有 380 种物质调节剂,其中 201 种是诱导剂,179 种是抑制剂。与 FerrDb V1 相比,整理的文章增加了>300%,铁死亡调节剂增加了 175%,铁死亡-疾病关联增加了 50.5%。环状 RNA 和假基因是 FerrDb V2 中的新型调节剂,非编码 RNA 的比例从 7.3%增加到 13.6%。外部基因相关数据被整合,使 FerrDb V2 能够进行引人深思和以基因为导向的分析。总之,FerrDb V2 将有助于深入了解铁死亡。FerrDb V2 可在 http://www.zhounan.org/ferrdb/ 免费获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc21/9825716/2443ba8add41/gkac935fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc21/9825716/7d68c60c220b/gkac935fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc21/9825716/f05666d3fcb9/gkac935fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc21/9825716/8df1f7cdc089/gkac935fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc21/9825716/dc368d7a0c51/gkac935fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc21/9825716/2443ba8add41/gkac935fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc21/9825716/7d68c60c220b/gkac935fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc21/9825716/f05666d3fcb9/gkac935fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc21/9825716/8df1f7cdc089/gkac935fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc21/9825716/dc368d7a0c51/gkac935fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc21/9825716/2443ba8add41/gkac935fig5.jpg

相似文献

[1]
FerrDb V2: update of the manually curated database of ferroptosis regulators and ferroptosis-disease associations.

Nucleic Acids Res. 2023-1-6

[2]
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[3]
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[6]
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[7]
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[8]
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[9]
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[10]
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引用本文的文献

[1]
Abnormal lipid metabolism and atherosclerosis: a new perspective on organelle function regulation and ferroptosis.

Front Immunol. 2025-8-14

[2]
The Capability to Undergo ACSL4-Mediated Ferroptosis Is Acquired During Brown-like Adipogenesis and Affected by Hypoxia.

Cells. 2025-8-13

[3]
Machine Learning-Based Identification and Experimental Validation of Hub Ferroptosis-Related Cuproptosis Genes in Lupus Nephritis.

J Inflamm Res. 2025-8-18

[4]
Potential novel diagnostic biomarkers of atrial fibrillation: four ferroptosis-related genes linking immune infiltration.

Eur J Med Res. 2025-8-26

[5]
FAR1 as a ferroptosis-related biomarker and potential therapeutic target in acute kidney injury: integrated bioinformatics and experimental validation.

Ren Fail. 2025-12

[6]
Comprehensive Analysis of Ferroptosis Markers in Lupus Nephritis Based on Bioinformatics Analysis and Experimental Validation.

J Inflamm Res. 2025-8-12

[7]
α-Lipoic acid mitigates age-related macular degeneration via ferroptosis: integrative multi-omics and network pharmacology.

Front Pharmacol. 2025-7-31

[8]
CYBB as a potential therapeutic target through influencing ferroptosis and macrophage in ovarian cancer.

Discov Oncol. 2025-8-9

[9]
The HBP Pathway Inhibitor FR054 Enhances Temozolomide Sensitivity in Glioblastoma Cells by Promoting Ferroptosis and Inhibiting O-GlcNAcylation.

CNS Neurosci Ther. 2025-8

[10]
Identifying ferroptosis-related genes in lung adenocarcinoma using random walk with restart in the PPI network.

Sci Rep. 2025-8-6

本文引用的文献

[1]
Multi-omics characterization and therapeutic liability of ferroptosis in melanoma.

Signal Transduct Target Ther. 2022-8-10

[2]
Targeting de novo lipogenesis and the Lands cycle induces ferroptosis in KRAS-mutant lung cancer.

Nat Commun. 2022-7-26

[3]
Ferroptosis turns 10: Emerging mechanisms, physiological functions, and therapeutic applications.

Cell. 2022-7-7

[4]
Selective ferroptosis vulnerability due to familial Alzheimer's disease presenilin mutations.

Cell Death Differ. 2022-11

[5]
eccDNAdb: a database of extrachromosomal circular DNA profiles in human cancers.

Oncogene. 2022-5

[6]
Ferroptosis-associated molecular classification characterized by distinct tumor microenvironment profiles in colorectal cancer.

Int J Biol Sci. 2022

[7]
Outstanding prognostic value of novel ferroptosis-related genes in chemoresistance osteosarcoma patients.

Sci Rep. 2022-3-23

[8]
Ferroptosis in Parkinson's disease: glia-neuron crosstalk.

Trends Mol Med. 2022-4

[9]
CD8 T cells and fatty acids orchestrate tumor ferroptosis and immunity via ACSL4.

Cancer Cell. 2022-4-11

[10]
Targeting ferroptosis protects against experimental (multi)organ dysfunction and death.

Nat Commun. 2022-2-24

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