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通过高通量酶特征分析赋予未知酶的功能。

Assigning Functions of Unknown Enzymes by High-Throughput Enzyme Characterization.

机构信息

ICP, CSIC, Madrid, Spain.

Centre for Environmental Biotechnology, School of Natural Sciences, Bangor University, Bangor, United Kingdom.

出版信息

Methods Mol Biol. 2023;2555:181-194. doi: 10.1007/978-1-0716-2795-2_13.

DOI:10.1007/978-1-0716-2795-2_13
PMID:36306087
Abstract

The discovery of new enzymes is strongly enabled by the implementation of high-throughput screening methods to detect enzymatic activity in single organisms or clone expression libraries, or to benchmark their performances against known prototypes. In this chapter, a number of methods, applicable at high-throughput scale, are described that allow the screening and characterization of enzymes relevant to biotechnology, particularly, ester-hydrolases (esterases, lipases, phospholipases, and polyester hydrolases).

摘要

新酶的发现得益于高通量筛选方法的实施,这些方法可用于检测单个生物体或克隆表达文库中的酶活性,或针对已知原型对其性能进行基准测试。在本章中,描述了一些适用于高通量规模的方法,这些方法可用于筛选和表征与生物技术相关的酶,特别是酯水解酶(酯酶、脂肪酶、磷脂酶和聚酯水解酶)。

相似文献

1
Assigning Functions of Unknown Enzymes by High-Throughput Enzyme Characterization.通过高通量酶特征分析赋予未知酶的功能。
Methods Mol Biol. 2023;2555:181-194. doi: 10.1007/978-1-0716-2795-2_13.
2
Functional-Based Screening Methods for Detecting Esterase and Lipase Activity Against Multiple Substrates.基于功能的筛选方法,用于检测针对多种底物的酯酶和脂肪酶活性
Methods Mol Biol. 2018;1835:109-117. doi: 10.1007/978-1-4939-8672-9_4.
3
Functional-based screening methods for lipases, esterases, and phospholipases in metagenomic libraries.宏基因组文库中脂肪酶、酯酶和磷脂酶的基于功能的筛选方法。
Methods Mol Biol. 2012;861:101-13. doi: 10.1007/978-1-61779-600-5_6.
4
Mixed carbonates as useful substrates for a fluorogenic assay for lipases and esterases.混合碳酸盐作为脂肪酶和酯酶荧光测定的有用底物。
Chembiochem. 2015 Mar 2;16(4):677-82. doi: 10.1002/cbic.201402528. Epub 2015 Feb 3.
5
High Throughput Screening of Esterases, Lipases and Phospholipases in Mutant and Metagenomic Libraries: A Review.突变体文库和宏基因组文库中酯酶、脂肪酶及磷脂酶的高通量筛选:综述
Comb Chem High Throughput Screen. 2016;19(8):605-615. doi: 10.2174/1386207319666151110123927.
6
Evaluation of the Impact of Esterases and Lipases from the Circulatory System against Substrates of Different Lipophilicity.评价循环系统中的酯酶和脂肪酶对不同亲脂性底物的影响。
Int J Mol Sci. 2022 Jan 23;23(3):1262. doi: 10.3390/ijms23031262.
7
Distinction between esterases and lipases: a kinetic study with vinyl esters and TAG.酯酶与脂肪酶的区别:对乙烯基酯和甘油三酯的动力学研究
Lipids. 2002 Jul;37(7):653-62. doi: 10.1007/s11745-002-0946-7.
8
High-throughput screening method for lipases/esterases.脂肪酶/酯酶的高通量筛选方法
Methods Mol Biol. 2012;861:89-100. doi: 10.1007/978-1-61779-600-5_5.
9
A Microtiter Plate-Based Assay to Screen for Active and Stereoselective Hydrolytic Enzymes in Enzyme Libraries.一种基于微孔板的方法,用于筛选酶文库中的活性和立体选择性水解酶。
Methods Mol Biol. 2017;1539:197-204. doi: 10.1007/978-1-4939-6691-2_11.
10
Screens for active and stereoselective hydrolytic enzymes.筛选活性和立体选择性水解酶。
Methods Mol Biol. 2010;668:169-76. doi: 10.1007/978-1-60761-823-2_11.

本文引用的文献

1
Fungal secretome profile categorization of CAZymes by function and family corresponds to fungal phylogeny and taxonomy: Example Aspergillus and Penicillium.真菌分泌物中 CAZymes 的功能和家族分类与真菌的系统发育和分类学相对应:以曲霉属和青霉属为例。
Sci Rep. 2020 Mar 20;10(1):5158. doi: 10.1038/s41598-020-61907-1.
2
Organic-Solvent-Tolerant Carboxylic Ester Hydrolases for Organic Synthesis.用于有机合成的有机溶剂耐受羧酸酯水解酶。
Appl Environ Microbiol. 2020 Apr 17;86(9). doi: 10.1128/AEM.00106-20.
3
Determinants and Prediction of Esterase Substrate Promiscuity Patterns.
酯酶底物混杂模式的决定因素与预测
ACS Chem Biol. 2018 Jan 19;13(1):225-234. doi: 10.1021/acschembio.7b00996. Epub 2017 Dec 20.
4
Genomic Enzymology: Web Tools for Leveraging Protein Family Sequence-Function Space and Genome Context to Discover Novel Functions.基因组酶学:利用蛋白质家族序列-功能空间和基因组背景发现新功能的网络工具。
Biochemistry. 2017 Aug 22;56(33):4293-4308. doi: 10.1021/acs.biochem.7b00614.
5
Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families.环境宏基因组文库的活性筛选揭示了新型羧酸酯酶家族。
Sci Rep. 2017 Mar 8;7:44103. doi: 10.1038/srep44103.
6
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.植物中代谢酶、代谢途径和基因簇的全基因组预测
Plant Physiol. 2017 Apr;173(4):2041-2059. doi: 10.1104/pp.16.01942. Epub 2017 Feb 22.
7
Enzymes are enriched in bacterial essential genes.酶富集于细菌必需基因中。
PLoS One. 2011;6(6):e21683. doi: 10.1371/journal.pone.0021683. Epub 2011 Jun 28.
8
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88.多功能细胞工厂黑曲霉CBS 513.88的基因组测序与分析
Nat Biotechnol. 2007 Feb;25(2):221-31. doi: 10.1038/nbt1282. Epub 2007 Jan 28.
9
Enzyme genomics: Application of general enzymatic screens to discover new enzymes.酶基因组学:应用通用酶筛选方法发现新酶。
FEMS Microbiol Rev. 2005 Apr;29(2):263-79. doi: 10.1016/j.femsre.2004.12.006.
10
Isolation and characterization of a bacterium that degrades various polyester-based biodegradable plastics.一种可降解多种聚酯基生物可降解塑料的细菌的分离与鉴定
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