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DNA条形码:一种用于物种鉴定的有效工具——综述

DNA barcoding, an effective tool for species identification: a review.

作者信息

Antil Sandeep, Abraham Jeeva Susan, Sripoorna S, Maurya Swati, Dagar Jyoti, Makhija Seema, Bhagat Pooja, Gupta Renu, Sood Utkarsh, Lal Rup, Toteja Ravi

机构信息

Acharya Narendra Dev College, University of Delhi, New Delhi, Delhi, India.

Maitreyi College, University of Delhi, New Delhi, Delhi, 110 021, India.

出版信息

Mol Biol Rep. 2023 Jan;50(1):761-775. doi: 10.1007/s11033-022-08015-7. Epub 2022 Oct 29.

DOI:10.1007/s11033-022-08015-7
PMID:36308581
Abstract

DNA barcoding is a powerful taxonomic tool to identify and discover species. DNA barcoding utilizes one or more standardized short DNA regions for taxon identification. With the emergence of new sequencing techniques, such as Next-generation sequencing (NGS), ONT MinION nanopore sequencing, and Pac Bio sequencing, DNA barcoding has become more accurate, fast, and reliable. Rapid species identification by DNA barcodes has been used in a variety of fields, including forensic science, control of the food supply chain, and disease understanding. The Consortium for Barcode of Life (CBOL) presents various working groups to identify the universal barcode gene, such as COI in metazoans; rbcL, matK, and ITS in plants; ITS in fungi; 16S rRNA gene in bacteria and archaea, and creating a reference DNA barcode library. In this article, an attempt has been made to analyze the various proposed DNA barcode for different organisms, strengths & limitations, recent advancements in DNA barcoding, and methods to speed up the DNA barcode reference library construction. This study concludes that constructing a reference library with high species coverage would be a major step toward identifying species by DNA barcodes. This can be achieved in a short period of time by using advanced sequencing and data analysis methods.

摘要

DNA条形码是一种用于识别和发现物种的强大分类工具。DNA条形码利用一个或多个标准化的短DNA区域进行分类单元识别。随着新一代测序(NGS)、ONT MinION纳米孔测序和Pac Bio测序等新测序技术的出现,DNA条形码变得更加准确、快速和可靠。通过DNA条形码进行快速物种识别已应用于包括法医学、食品供应链控制和疾病认知等多个领域。生命条形码联盟(CBOL)设立了多个工作组来确定通用条形码基因,如后生动物中的细胞色素氧化酶亚基I(COI);植物中的rbcL、matK和ITS;真菌中的ITS;细菌和古菌中的16S rRNA基因,并创建一个参考DNA条形码文库。在本文中,我们尝试分析针对不同生物体提出的各种DNA条形码、其优势与局限性、DNA条形码的最新进展以及加速DNA条形码参考文库构建的方法。本研究得出结论:构建一个具有高物种覆盖率的参考文库将是通过DNA条形码识别物种的重要一步。通过使用先进的测序和数据分析方法,可以在短时间内实现这一目标。

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