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竹子转座酶及宿主因子对酵母中转座作用影响的人工优化

Artificial optimization of bamboo transposase and host factors effects on transposition in yeast.

作者信息

Zhou Xiaohong, Xie Jiamin, Xu Chao, Cao Xiuling, Zou Long-Hai, Zhou Mingbing

机构信息

State Key Laboratory of Subtropical Silviculture, Institute of Bamboo Research, Zhejiang A&F University, Hangzhou, China.

出版信息

Front Plant Sci. 2022 Oct 20;13:1004732. doi: 10.3389/fpls.2022.1004732. eCollection 2022.

Abstract

() are promising tools for gene cloning, gene expression, and gene tagging. We have characterized two transposons from moso bamboo, and . , is smaller in size and has higher natural activities, thus making it a more potential genomic tool compared to . Using a two-component system consisting of a transposase expression cassette and a non-autonomous transposon cotransformed in yeast, we investigated the transposition activity of and created hyperactive transposases. Five out of 19 amino acid mutations in outperformed the wild-type in terms of catalytic activities, especially with the S347R mutant having 6.7-fold higher transposition activity. Moreover, 36 yeast mutants with single-gene deletion were chosen to screen the effects of the host factors on transposition. Compared to the control strain (), the mobility of was greatly increased in 9 mutants and dramatically decreased in 7 mutants. The transposition ability in the mutant was 15-fold higher than in the control, while it was lowered to 1/66 in the mutant. Transcriptomic analysis exhibited that defection led to the significantly impaired , expression and dramatically boosted expression, whereas defection resulted in significantly suppressed expression of , and . Protein methylation, chromatin and RNA transcription may affect the transposition efficiency in yeast. Overall, the findings provided evidence for transposition regulation and offered an alternative genomic tool for moso bamboo and other plants.

摘要

()是基因克隆、基因表达和基因标记的有前景的工具。我们已经鉴定了毛竹的两个转座子,和。,尺寸较小且具有更高的天然活性,因此与相比,它是一种更具潜力的基因组工具。使用由转座酶表达盒和在酵母中共转化的非自主转座子组成的双组分系统,我们研究了的转座活性并创建了超活性转座酶。中19个氨基酸突变中的5个在催化活性方面优于野生型,特别是S347R突变体的转座活性高6.7倍。此外,选择36个单基因缺失的酵母突变体来筛选宿主因子对转座的影响。与对照菌株()相比,在9个突变体中转座活性大大增加,在7个突变体中显著降低。突变体中的转座能力比对照高15倍,而在突变体中则降至1/66。转录组分析表明,缺陷导致、表达显著受损,表达显著增强,而缺陷导致、和表达显著抑制。蛋白质甲基化、染色质和RNA转录可能影响酵母中的转座效率。总体而言,这些发现为转座调控提供了证据,并为毛竹和其他植物提供了一种替代的基因组工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce9e/9632168/2add186ffddf/fpls-13-1004732-g001.jpg

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