118 个中东家庭智力障碍遗传学研究的诊断率、候选基因和陷阱。
The diagnostic yield, candidate genes, and pitfalls for a genetic study of intellectual disability in 118 middle eastern families.
机构信息
Department of Genetics, College of Medicine and Health Sciences, Sultan Qaboos University, Muscat, Oman.
Genetic and Developmental Medicine Clinic, Sultan Qaboos University Hospital, Muscat, Oman.
出版信息
Sci Rep. 2022 Nov 7;12(1):18862. doi: 10.1038/s41598-022-22036-z.
Global Developmental Delay/Intellectual disability (ID) is the term used to describe various disorders caused by abnormal brain development and characterized by impairments in cognition, communication, behavior, or motor skills. In the past few years, whole-exome sequencing (WES) has been proven to be a powerful, robust, and scalable approach for candidate gene discoveries in consanguineous populations. In this study, we recruited 215 patients affected with ID from 118 Middle Eastern families. Whole-exome sequencing was completed for 188 individuals. The average age at which WES was completed was 8.5 years. Pathogenic or likely pathogenic variants were detected in 32/118 families (27%). Variants of uncertain significance were seen in 33/118 families (28%). The candidate genes with a possible association with ID were detected in 32/118 (27%) with a total number of 64 affected individuals. These genes are novel, were previously reported in a single family, or cause strikingly different phenotypes with a different mode of inheritance. These genes included: AATK, AP1G2, CAMSAP1, CCDC9B, CNTROB, DNAH14, DNAJB4, DRG1, DTNBP1, EDRF1, EEF1D, EXOC8, EXOSC4, FARSB, FBXO22, FILIP1, INPP4A, P2RX7, PRDM13, PTRHD1, SCN10A, SCYL2, SMG8, SUPV3L1, TACC2, THUMPD1, XPR1, ZFYVE28. During the 5 years of the study and through gene matching databases, several of these genes have now been confirmed as causative of ID. In conclusion, understanding the causes of ID will help understand biological mechanisms, provide precise counseling for affected families, and aid in primary prevention.
全球发育迟缓/智力障碍 (ID) 是指由异常大脑发育引起的各种障碍,其特征为认知、沟通、行为或运动技能受损。在过去的几年中,全外显子组测序 (WES) 已被证明是一种强大、稳健且可扩展的方法,可用于同系人群中的候选基因发现。在这项研究中,我们招募了 118 个中东家庭的 215 名 ID 患者。对 188 名个体进行了全外显子组测序。WES 完成的平均年龄为 8.5 岁。在 118 个家庭中发现了 32 个致病性或可能致病性变异(27%)。在 118 个家庭中发现了 33 个意义不明的变异(28%)。在 118 个家庭中检测到 32 个(27%)候选基因可能与 ID 相关,共涉及 64 名受影响的个体。这些基因是新的,以前在单个家庭中报道过,或者导致明显不同的表型,具有不同的遗传模式。这些基因包括:AATK、AP1G2、CAMSAP1、CCDC9B、CNTROB、DNAH14、DNAJB4、DRG1、DTNBP1、EDRF1、EEF1D、EXOC8、EXOSC4、FARSB、FBXO22、FILIP1、INPP4A、P2RX7、PRDM13、PTRHD1、SCN10A、SCYL2、SMG8、SUPV3L1、TACC2、THUMPD1、XPR1、ZFYVE28。在研究的 5 年内,通过基因匹配数据库,其中一些基因现已被确认为 ID 的致病原因。总之,了解 ID 的病因有助于了解生物学机制,为受影响的家庭提供精确的咨询,并有助于初级预防。