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匹配氨基酸膜偏好谱以提高抗菌肽的活性。

Matching amino acids membrane preference profile to improve activity of antimicrobial peptides.

机构信息

School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.

Department of Microbiology, School of Medicine, Kyungpook National University, 680 Gukchaebosangro, Jung-gu, Daegu, 41944, Korea.

出版信息

Commun Biol. 2022 Nov 8;5(1):1199. doi: 10.1038/s42003-022-04164-4.


DOI:10.1038/s42003-022-04164-4
PMID:36347951
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9643456/
Abstract

Antimicrobial peptides (AMPs) are cationic antibiotics that can kill multidrug-resistant bacteria via membrane insertion. However, their weak activity limits their clinical use. Ironically, the cationic charge of AMPs is essential for membrane binding, but it obstructs membrane insertion. In this study, we postulate that this problem can be overcome by locating cationic amino acids at the energetically preferred membrane surface. All amino acids have an energetically preferred or less preferred membrane position profile, and this profile is strongly related to membrane insertion. However, most AMPs do not follow this profile. One exception is protegrin-1, a powerful but neglected AMP. In the present study, we found that a potent AMP, WCopW5, strongly resembles protegrin-1 and that the match between its sequence and the preferred position profile closely correlates with its antimicrobial activity. One of its derivatives, WCopW43, has antimicrobial activity comparable to that of the most effective AMPs in clinical use.

摘要

抗菌肽(AMPs)是阳离子抗生素,可通过膜插入杀死多药耐药菌。然而,其活性较弱限制了它们的临床应用。具有讽刺意味的是,AMPs 的阳离子电荷对于膜结合至关重要,但它会阻碍膜插入。在这项研究中,我们假设通过将阳离子氨基酸定位在能量上优先的膜表面可以克服这个问题。所有氨基酸都有一个能量上优先或不太优先的膜位置分布,这个分布与膜插入密切相关。然而,大多数 AMP 并不遵循这个分布。一个例外是保护素-1,一种强大但被忽视的 AMP。在本研究中,我们发现一种有效的 AMP,WCopW5,与保护素-1非常相似,其序列与优先位置分布之间的匹配与其抗菌活性密切相关。它的一个衍生物 WCopW43 具有与临床使用的最有效 AMP 相当的抗菌活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d667/9643456/e53d91053dc6/42003_2022_4164_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d667/9643456/75717816cfcf/42003_2022_4164_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d667/9643456/291e70c2f96c/42003_2022_4164_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d667/9643456/b41c226e564b/42003_2022_4164_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d667/9643456/e53d91053dc6/42003_2022_4164_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d667/9643456/75717816cfcf/42003_2022_4164_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d667/9643456/291e70c2f96c/42003_2022_4164_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d667/9643456/b41c226e564b/42003_2022_4164_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d667/9643456/e53d91053dc6/42003_2022_4164_Fig4_HTML.jpg

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引用本文的文献

[1]
Insights into the Adsorption Mechanisms of the Antimicrobial Peptide CIDEM-501 on Membrane Models.

Antibiotics (Basel). 2024-2-8

[2]
Possible Molecular Mechanisms Underlying the Decrease in the Antibacterial Activity of Protamine-like Proteins after Exposure of to Chromium and Mercury.

Int J Mol Sci. 2023-5-26

本文引用的文献

[1]
Understanding of Colistin Usage in Food Animals and Available Detection Techniques: A Review.

Animals (Basel). 2020-10-16

[2]
Synthetic molecular evolution of host cell-compatible, antimicrobial peptides effective against drug-resistant, biofilm-forming bacteria.

Proc Natl Acad Sci U S A. 2020-4-2

[3]
Is the Mirror Image a True Reflection? Intrinsic Membrane Chirality Modulates Peptide Binding.

J Am Chem Soc. 2019-12-10

[4]
Chimeric peptidomimetic antibiotics against Gram-negative bacteria.

Nature. 2019-10-23

[5]
Maintaining Integrity Under Stress: Envelope Stress Response Regulation of Pathogenesis in Gram-Negative Bacteria.

Front Cell Infect Microbiol. 2019-9-4

[6]
Design of stapled antimicrobial peptides that are stable, nontoxic and kill antibiotic-resistant bacteria in mice.

Nat Biotechnol. 2019-8-19

[7]
Potential Mechanisms of Mucin-Enhanced Acinetobacter baumannii Virulence in the Mouse Model of Intraperitoneal Infection.

Infect Immun. 2019-10-18

[8]
Nano-viscosimetry analysis of the membrane disrupting action of the bee venom peptide melittin.

Sci Rep. 2019-7-25

[9]
Simulation-Guided Rational de Novo Design of a Small Pore-Forming Antimicrobial Peptide.

J Am Chem Soc. 2019-3-13

[10]
Secondary structures and cell-penetrating abilities of arginine-rich peptide foldamers.

Sci Rep. 2019-2-4

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