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Multiplex PCR assay for correct identification of the fish pathogenic species of Edwardsiella genus reveals the presence of E. anguillarum in South America in strains previously characterized as E. tarda.多重聚合酶链反应检测用于正确鉴定爱德华氏菌属的鱼类病原种，揭示了先前被鉴定为迟缓爱德华氏菌的南美洲菌株中存在鳗弧菌。
J Appl Microbiol. 2022 Jun;132(6):4225-4235. doi: 10.1111/jam.15538. Epub 2022 Apr 4.
2
Ori-Finder 3: a web server for genome-wide prediction of replication origins in Saccharomyces cerevisiae.Ori-Finder 3：一个用于酿酒酵母全基因组复制起点预测的网络服务器。
Brief Bioinform. 2021 May 20;22(3). doi: 10.1093/bib/bbaa182.
3
KBase: The United States Department of Energy Systems Biology Knowledgebase.KBase：美国能源部系统生物学知识库。
Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163.
4
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
5
Phylogenomics characterization of a highly virulent Edwardsiella strain ET080813(T) encoding two distinct T3SS and three T6SS gene clusters: Propose a novel species as Edwardsiella anguillarum sp. nov.编码两个不同三型分泌系统（T3SS）和三个六型分泌系统（T6SS）基因簇的高毒力爱德华氏菌菌株ET080813(T)的系统发育基因组学特征：提议将其作为鳗弧菌新种（Edwardsiella anguillarum sp. nov.）
Syst Appl Microbiol. 2015 Feb;38(1):36-47. doi: 10.1016/j.syapm.2014.10.008. Epub 2014 Nov 7.
6
In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.使用质粒查找工具（PlasmidFinder）和质粒多位点序列分型进行质粒的电子检测和分型
Antimicrob Agents Chemother. 2014 Jul;58(7):3895-903. doi: 10.1128/AAC.02412-14. Epub 2014 Apr 28.
7
Edwardsiella piscicida sp. nov., a novel species pathogenic to fish.爱德华氏菌属新种，一种对鱼类具有致病性的新型物种。
J Appl Microbiol. 2013 Mar;114(3):644-54. doi: 10.1111/jam.12080. Epub 2013 Jan 7.
8
CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes.CONTIGuator：一种用于对草图基因组进行结构洞察的细菌基因组完成工具。
Source Code Biol Med. 2011 Jun 21;6:11. doi: 10.1186/1751-0473-6-11.
9
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10
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.DNA-DNA杂交值及其与全基因组序列相似性的关系。
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从巴西分离出的新兴鱼类病原体的基因组报告。

Genome Report of Emergent Fish Pathogen Recovered from in Brazil.

作者信息

Ferrari Natália A, Takashe João Vitor G, Aburjaile Flávia F, Azevedo Vasco, da Costa Mateus M, Brenig Bertram, Rocha Francisco E P, Pereira Ulisses de P

机构信息

Laboratory of Fish Bacteriology, Department of Preventive Veterinary Medicine, State University of Londrina, Londrina, Paraná, Brazil.

Preventive Veterinary Medicine Department, Veterinary School, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.

出版信息

Microbiol Resour Announc. 2022 Dec 15;11(12):e0079622. doi: 10.1128/mra.00796-22. Epub 2022 Nov 9.

DOI:10.1128/mra.00796-22
PMID:36350174
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9753652/
Abstract

Edwardsiella piscicida is a Gram-negative bacteria belonging to the family which affects several species of marine and freshwater fish. We present the complete genome of . strain BEP80 recovered from the Brazilian catfish named Surubim (Pseudoplatystoma corruscans), consisting a chromosome of 3,883,256 bp and no plasmids.

摘要

杀鱼爱德华氏菌是一种革兰氏阴性菌，属于可感染多种海洋和淡水鱼类的菌科。我们展示了从巴西鲶鱼苏鲁比姆（Pseudoplatystoma corruscans）分离出的BEP80菌株的完整基因组，其由一条3,883,256 bp的染色体组成，无质粒。