• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

KBase: The United States Department of Energy Systems Biology Knowledgebase.

作者信息

Arkin Adam P, Cottingham Robert W, Henry Christopher S, Harris Nomi L, Stevens Rick L, Maslov Sergei, Dehal Paramvir, Ware Doreen, Perez Fernando, Canon Shane, Sneddon Michael W, Henderson Matthew L, Riehl William J, Murphy-Olson Dan, Chan Stephen Y, Kamimura Roy T, Kumari Sunita, Drake Meghan M, Brettin Thomas S, Glass Elizabeth M, Chivian Dylan, Gunter Dan, Weston David J, Allen Benjamin H, Baumohl Jason, Best Aaron A, Bowen Ben, Brenner Steven E, Bun Christopher C, Chandonia John-Marc, Chia Jer-Ming, Colasanti Ric, Conrad Neal, Davis James J, Davison Brian H, DeJongh Matthew, Devoid Scott, Dietrich Emily, Dubchak Inna, Edirisinghe Janaka N, Fang Gang, Faria José P, Frybarger Paul M, Gerlach Wolfgang, Gerstein Mark, Greiner Annette, Gurtowski James, Haun Holly L, He Fei, Jain Rashmi, Joachimiak Marcin P, Keegan Kevin P, Kondo Shinnosuke, Kumar Vivek, Land Miriam L, Meyer Folker, Mills Marissa, Novichkov Pavel S, Oh Taeyun, Olsen Gary J, Olson Robert, Parrello Bruce, Pasternak Shiran, Pearson Erik, Poon Sarah S, Price Gavin A, Ramakrishnan Srividya, Ranjan Priya, Ronald Pamela C, Schatz Michael C, Seaver Samuel M D, Shukla Maulik, Sutormin Roman A, Syed Mustafa H, Thomason James, Tintle Nathan L, Wang Daifeng, Xia Fangfang, Yoo Hyunseung, Yoo Shinjae, Yu Dantong

机构信息

Department of Bioengineering, University of California, Berkeley, California, USA.

Environmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.

出版信息

Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163.

DOI:10.1038/nbt.4163
PMID:29979655
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6870991/
Abstract
摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fa/6870991/5bd8ea8e8145/41587_2018_BFnbt4163_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fa/6870991/beb5ee61a73b/41587_2018_BFnbt4163_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fa/6870991/5bd8ea8e8145/41587_2018_BFnbt4163_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fa/6870991/beb5ee61a73b/41587_2018_BFnbt4163_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fa/6870991/5bd8ea8e8145/41587_2018_BFnbt4163_Fig2_HTML.jpg

相似文献

1
KBase: The United States Department of Energy Systems Biology Knowledgebase.KBase:美国能源部系统生物学知识库。
Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163.
2
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.大卫知识库:一个以基因为中心的数据库,整合了异构基因注释资源,以促进高通量基因功能分析。
BMC Bioinformatics. 2007 Nov 2;8:426. doi: 10.1186/1471-2105-8-426.
3
MOVR-NeuroMuscular ObserVational Research, a unified data hub for neuromuscular diseases.MOVR-神经肌肉观察性研究,一个用于神经肌肉疾病的统一数据中心。
Genet Med. 2019 Mar;21(3):536-538. doi: 10.1038/s41436-018-0086-5. Epub 2018 Jun 22.
4
Standard biological parts knowledgebase.标准生物部件知识库。
PLoS One. 2011 Feb 24;6(2):e17005. doi: 10.1371/journal.pone.0017005.
5
Using KBase to Assemble and Annotate Prokaryotic Genomes.使用KBase组装和注释原核生物基因组。
Curr Protoc Microbiol. 2017 Aug 11;46:1E.13.1-1E.13.18. doi: 10.1002/cpmc.37.
6
Big data management challenges in health research-a literature review.大数据管理在健康研究中的挑战——文献综述
Brief Bioinform. 2019 Jan 18;20(1):156-167. doi: 10.1093/bib/bbx086.
7
The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource.蛋白质结构计划结构生物学知识库技术门户:一个结构生物学网络资源。
J Struct Funct Genomics. 2012 Jun;13(2):57-62. doi: 10.1007/s10969-012-9133-7. Epub 2012 Apr 6.
8
Computational Methods in Systems Biology.系统生物学中的计算方法
Biosystems. 2016 Nov;149:1-2. doi: 10.1016/j.biosystems.2016.10.006.
9
Design of Knowledge Bases for Plant Gene Regulatory Networks.植物基因调控网络知识库的设计
Methods Mol Biol. 2017;1629:207-223. doi: 10.1007/978-1-4939-7125-1_14.
10
Strong inference for systems biology.系统生物学的强推理
PLoS Comput Biol. 2009 Aug;5(8):e1000459. doi: 10.1371/journal.pcbi.1000459. Epub 2009 Aug 28.

引用本文的文献

1
Population structure, resistome, and virulome of strains from milk of subclinical bovine mastitis in South Africa.南非亚临床型牛乳腺炎乳汁中菌株的种群结构、耐药基因组和毒力基因组
Front Cell Infect Microbiol. 2025 Aug 22;15:1654546. doi: 10.3389/fcimb.2025.1654546. eCollection 2025.
2
Four novel species of the genus Aquimarina isolated from marine sponges: Aquimarina callyspongiae sp. nov., Aquimarina mycalae sp. nov., Aquimarina discodermiae sp. nov., and Aquimarina penaris sp. nov.从海洋海绵中分离出的四种新的海生水杆菌属物种:新种卡利斯海绵海生水杆菌、新种麦卡拉海生水杆菌、新种盘皮海绵海生水杆菌和新种笔管海生水杆菌。
Antonie Van Leeuwenhoek. 2025 Sep 5;118(10):150. doi: 10.1007/s10482-025-02156-y.
3

本文引用的文献

1
Enhancing reproducibility for computational methods.提高计算方法的可重复性。
Science. 2016 Dec 9;354(6317):1240-1241. doi: 10.1126/science.aah6168.
2
Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation.计算和应用原子调控子以理解基因表达与调控。
Front Microbiol. 2016 Nov 24;7:1819. doi: 10.3389/fmicb.2016.01819. eCollection 2016.
3
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota.生成 773 个人肠道微生物组成员的基因组规模代谢重建。
Advanced Strategies in Phage Research: Innovations, Applications, and Challenges.
噬菌体研究的先进策略:创新、应用与挑战
Microorganisms. 2025 Aug 21;13(8):1960. doi: 10.3390/microorganisms13081960.
4
Does Bovine Raw Milk Represent a Potential Risk for Vancomycin-Resistant Enterococci (VRE) Transmission to Humans?生牛乳会成为耐万古霉素肠球菌(VRE)传播给人类的潜在风险因素吗?
Antibiotics (Basel). 2025 Aug 8;14(8):814. doi: 10.3390/antibiotics14080814.
5
Environmental Dispersion of Multiresistant in Aquatic Ecosystems in an Area of Spain with a High Density of Pig Farming.西班牙养猪业高密度地区水生生态系统中多重耐药菌的环境扩散
Antibiotics (Basel). 2025 Jul 25;14(8):753. doi: 10.3390/antibiotics14080753.
6
A stable 15-member bacterial SynCom promotes growth under drought stress.一个由15个成员组成的稳定细菌合成群落促进干旱胁迫下的生长。
Front Microbiol. 2025 Aug 11;16:1649750. doi: 10.3389/fmicb.2025.1649750. eCollection 2025.
7
Gut microbiota and tuberculosis.肠道微生物群与结核病
Imeta. 2025 Jun 22;4(4):e70054. doi: 10.1002/imt2.70054. eCollection 2025 Aug.
8
Genome‑Based Reclassification of Dactylosporangium matsuzakiense Shomura and Niida 1983 As A Later Heterotypic Synonym of Dactylosporangium vinaceum Shomura et al. 1983 and Proposal of Dactylosporangium vinaceum subsp. vinaceum subsp. nov. and Dactylosporangium vinaceum subsp. matsuzakiense subsp. nov.基于基因组的对松崎指孢囊菌(Shomura和Niida,1983)的重新分类,将其作为酒红色指孢囊菌(Shomura等人,1983)的晚出异名,并提出酒红色指孢囊菌酒红色亚种新亚种和酒红色指孢囊菌松崎亚种新亚种
Curr Microbiol. 2025 Aug 23;82(10):471. doi: 10.1007/s00284-025-04448-y.
9
Identifying microbial functional guilds performing cryptic organotrophic and lithotrophic redox cycles in anaerobic granular biofilms.鉴定在厌氧颗粒生物膜中执行隐秘有机营养和无机营养氧化还原循环的微生物功能群落。
PLoS One. 2025 Aug 18;20(8):e0330380. doi: 10.1371/journal.pone.0330380. eCollection 2025.
10
Taxonomic Characterization and Genome Analysis of Polaribacter gochangensis sp. nov., Isolated From a Tidal Clam Farm.从潮间带蛤蜊养殖场分离出的高敞极地杆菌(Polaribacter gochangensis sp. nov.)的分类学特征及基因组分析
Curr Microbiol. 2025 Aug 18;82(10):463. doi: 10.1007/s00284-025-04433-5.
Nat Biotechnol. 2017 Jan;35(1):81-89. doi: 10.1038/nbt.3703. Epub 2016 Nov 28.
4
Modeling central metabolism and energy biosynthesis across microbial life.模拟微生物生命过程中的中心代谢和能量生物合成。
BMC Genomics. 2016 Aug 8;17:568. doi: 10.1186/s12864-016-2887-8.
5
Microbial Community Metabolic Modeling: A Community Data-Driven Network Reconstruction.微生物群落代谢建模:一种基于群落数据驱动的网络重建方法
J Cell Physiol. 2016 Nov;231(11):2339-45. doi: 10.1002/jcp.25428. Epub 2016 Jun 2.
6
Ten simple rules for the open development of scientific software.科学软件开放开发的十条简单规则。
PLoS Comput Biol. 2012;8(12):e1002802. doi: 10.1371/journal.pcbi.1002802. Epub 2012 Dec 6.
7
Phytozome: a comparative platform for green plant genomics.植物生物学数据库:一个用于绿色植物基因组学的比较平台。
Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86. doi: 10.1093/nar/gkr944. Epub 2011 Nov 22.
8
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions.BiGG:一个大规模代谢重建的生化遗传和基因组知识库。
BMC Bioinformatics. 2010 Apr 29;11:213. doi: 10.1186/1471-2105-11-213.
9
Global phenotypic characterization of bacteria.细菌的全球表型特征分析
FEMS Microbiol Rev. 2009 Jan;33(1):191-205. doi: 10.1111/j.1574-6976.2008.00149.x. Epub 2008 Nov 27.
10
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.美国国立生物技术信息中心参考序列(RefSeq):一个经过整理的基因组、转录本和蛋白质的非冗余序列数据库。
Nucleic Acids Res. 2007 Jan;35(Database issue):D61-5. doi: 10.1093/nar/gkl842. Epub 2006 Nov 27.