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sp. nov.,分离自黄环草螟()。

sp. nov., isolated from a yellow-ringed grass moth ().

机构信息

National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Thailand Science Park, Phaholyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand.

National Biobank of Thailand (NBT), National Science and Technology Development Agency (NSTDA), Klong Luang, Pathumthani 12120, Thailand.

出版信息

Int J Syst Evol Microbiol. 2022 Nov;72(11). doi: 10.1099/ijsem.0.005604.

Abstract

A novel mycelium-forming actinomycete strain, designated A-F 0318, was isolated from a yellow-ringed grass moth () collected from Phitsanulok Province, Thailand. Long chains of non-motile cylindrical spores with a smooth surface developed on aerial mycelia. The polyphasic taxonomic study suggested that strain A-F 0318 belonged to the genus . The 16S rRNA gene sequence analysis indicated that strain A-F 0318 was closely related to LL-DO5139 with 97.94 % sequence similarity. The average nucleotide identity (ANI) based on blast, ANI based on the MUMmer algorithm and average amino acid identity values of strain A-F 0318 with LL-DO5139 were 86.9, 89.1 and 84.24 %, respectively. The digital DNA-DNA hybridization value between A-F 0318 and its closest relative, LL-DO5139 was 33.8 %. The digital G+C content of the genomic DNA was 71.7 mol%. The cell-wall peptidoglycan contained -diaminopimelic acid. The whole-cell sugars contained ribose, xylose, glucose and galactose. The predominant menaquinone was MK-10(H). The predominant fatty acids were iso-C, anteiso-C, anteiso-C and iso-C G. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, two unknown phosphoglycolipids and one unknown phospholipid. Based on comparative analysis of genotypic, phenotypic and chemotaxonomic data, the novel actinomycete strain A-F 0318 (=TBRC 13612=NBRC 115417) represents the type strain of a novel species, for which the name sp. nov. is proposed.

摘要

一株新型产孢放线菌菌株,命名为 A-F 0318,从泰国佛统府采集的黄环草蛾()中分离得到。气生菌丝上形成长链的非运动圆柱形孢子,表面光滑。多相分类学研究表明,菌株 A-F 0318 属于放线菌属。16S rRNA 基因序列分析表明,菌株 A-F 0318 与 LL-DO5139 具有 97.94%的序列相似性。基于 blast 的平均核苷酸同一性(ANI)、基于 MUMmer 算法的 ANI 和菌株 A-F 0318 与 LL-DO5139 的平均氨基酸同一性值分别为 86.9、89.1 和 84.24%。A-F 0318 与其最接近的亲缘关系菌株 LL-DO5139 的数字 DNA-DNA 杂交值为 33.8%。基因组 DNA 的数字 G+C 含量为 71.7 mol%。细胞壁肽聚糖含有 -二氨基庚二酸。全细胞糖含有核糖、木糖、葡萄糖和半乳糖。主要的menaquinone 是 MK-10(H)。主要脂肪酸是 iso-C、anteiso-C、anteiso-C 和 iso-C G。极性脂谱由双磷脂酰甘油、磷脂酰甘油、磷脂酰肌醇、磷脂酰肌醇甘露糖苷、两种未知的磷酸甘油酯和一种未知的磷脂组成。基于基因型、表型和化学分类数据的比较分析,新型放线菌菌株 A-F 0318(=TBRC 13612=NBRC 115417)代表一个新种的模式菌株,建议将其命名为 sp. nov.。

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