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完成 5 种 Idiocerini 叶蝉属(半翅目:叶蝉科)的完整线粒体基因组分析。

Complete Mitogenome Analysis of Five Leafhopper Species of Idiocerini (Hemiptera: Cicadellidae).

机构信息

College of Life Sciences & Technology, Inner Mongolia Normal University, Hohhot 010022, China.

Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China.

出版信息

Genes (Basel). 2022 Nov 1;13(11):2000. doi: 10.3390/genes13112000.

DOI:10.3390/genes13112000
PMID:36360236
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9690763/
Abstract

Insect mitochondrial genomes (mitogenomes) are of great interest in exploring molecular evolution, phylogenetics, and biogeography. So far, only 12 mitogenomes of the leafhopper tribe Idiocerini have been released in GenBank, although the tribe comprises 488 known species including some agricultural, forestry, and horticultural pests. In order to compare and analyze the mitochondrial genome structure of Idiocerini and even the selective pressure of 13 protein-coding genes (PCGs) of the family Cicadellidae, the complete mitogenomes of five species including , , , , and a new species of a new genus were determined by next-generation sequencing. The size of the newly determined mitogenomes ranged from 14,733 bp to 15,044 bp, comprising the standard set of 13 PCGs, 22 transfer RNA genes, two ribosomal RNA genes, and a long non-coding control region (CR). The extent of purifying selection presented different pictures in the tribe and the family. The less pronounced genes (0.5 < dN/dS < 1) were and in Idiocerin, whereas in the family Cicadellidae including the sequences of Idiocerin, - and genes were less pronounced. The codon encoding leucine was the most common in all species, and the codon encoding serine 1 was the most common in all species except for . Interestingly, in , another of the most common codons is that encoding serine 2. Among the 17 examined species of the Idiocerini, 14 species contained the tandem repeats, and 11 species of them contained the motif "TTATA". These findings will promote research on the structure and evolution of the mitochondrial genome and highlight the need for more mitogenomes in Cicadellidae.

摘要

昆虫线粒体基因组(mitogenomes)在探索分子进化、系统发育和生物地理学方面具有重要意义。迄今为止,尽管该部落包括已知的 488 种物种,包括一些农业、林业和园艺害虫,但在 GenBank 中仅发布了 12 种叶蝉部落的线粒体基因组。为了比较和分析叶蝉部落甚至蝉科 13 个蛋白质编码基因(PCGs)的线粒体基因组结构,通过下一代测序确定了五个物种的完整线粒体基因组,包括 、 、 、 和一个新属的一个新种。新确定的线粒体基因组大小从 14733bp 到 15044bp 不等,包含标准的 13 个 PCGs、22 个转移 RNA 基因、两个核糖体 RNA 基因和一个长非编码控制区(CR)。在部落和家族中,净化选择的程度呈现出不同的画面。在叶蝉部落中,不那么明显的基因(0.5 < dN/dS < 1)是 和 ,而在包括叶蝉部落序列的蝉科中,-和 基因不那么明显。所有物种的密码子编码亮氨酸最常见,除 外,所有物种的密码子编码丝氨酸 1 最常见。有趣的是,在 中,另一个最常见的密码子是编码丝氨酸 2。在叶蝉部落的 17 种被检查的物种中,有 14 种含有串联重复,其中 11 种含有“TTATA”基序。这些发现将促进线粒体基因组结构和进化的研究,并强调需要更多的蝉科线粒体基因组。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/e845f4bc6c3c/genes-13-02000-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/a9309663b163/genes-13-02000-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/bb916aecff79/genes-13-02000-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/1c7f10fc13a4/genes-13-02000-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/016fb5de00d7/genes-13-02000-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/d744e8309b17/genes-13-02000-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/e845f4bc6c3c/genes-13-02000-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/a9309663b163/genes-13-02000-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/bb916aecff79/genes-13-02000-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/1c7f10fc13a4/genes-13-02000-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/016fb5de00d7/genes-13-02000-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/d744e8309b17/genes-13-02000-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/593e/9690763/e845f4bc6c3c/genes-13-02000-g006.jpg

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