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一种新型噬菌体 Phage vB_EcoM-4HA13 的分离、鉴定及基因组分析,代表了新型噬菌体科中的一个新噬菌体属。

Isolation, Characterization, and Genome Analysis of a Novel Bacteriophage, Phage vB_EcoM-4HA13, Representing a New Phage Genus in the Novel Phage Family .

机构信息

Guelph Research and Development Centre, Agriculture and Agri-Food Canada, Guelph, ON N1G 5C9, Canada.

Department of Molecular and Cellular Biology, College of Biological Science, University of Guelph, Guelph, ON N1G 2W1, Canada.

出版信息

Viruses. 2022 Oct 26;14(11):2356. doi: 10.3390/v14112356.

DOI:10.3390/v14112356
PMID:36366454
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9699118/
Abstract

Shiga toxin-producing (STEC) is one of the leading causes of foodborne illnesses in North America and can lead to severe symptoms, with increased fatality risk for young children. While O157:H7 remains the dominant STEC serotype associated with foodborne outbreaks, there has been an increasing number of non-O157 STEC outbreaks in recent years. For the food industry, lytic bacteriophages offer an organic, self-limiting alternative to pathogen reduction-one that could replace or reduce the use of chemical and physical food processing methods. From EHEC-enriched sewage, we isolated a novel bacteriophage, vB_EcoM-4HA13 (4HA13). Phenotypic characterizations revealed 4HA13 to possess a myoviral morphotype, with a high specificity to non-motile O111 serotype, and a long latent period (90 min). Through genomic analyses, this 52,401-bp dsDNA phage was found to contain 81 CDS, but no detectable presence of antibiotic resistance, integrase, or virulence genes. A BLASTn search for each of the identified 81 CDS yielded homologues with low levels of similarity. Comparison of RNA polymerase and terminase large subunit amino acid sequences led to the proposal and acceptance of a new bacteriophage family, , with 4HA13 representing a new species and genus. The discovery of this phage has broadened our current knowledge of bacteriophage diversity.

摘要

产志贺毒素(STEC)是北美食源性疾病的主要原因之一,可导致严重症状,增加幼儿的死亡风险。虽然 O157:H7 仍然是与食源性疫情相关的主要 STEC 血清型,但近年来非 O157 STEC 疫情的数量有所增加。对于食品行业,裂解噬菌体为病原体减少提供了一种有机的、自我限制的替代方法——它可以替代或减少化学和物理食品加工方法的使用。从富含 EHEC 的污水中,我们分离到一种新型噬菌体 vB_EcoM-4HA13(4HA13)。表型特征表明 4HA13 具有肌病毒形态,对非运动性 O111 血清型具有高度特异性,潜伏期长(90 分钟)。通过基因组分析,发现这种 52401bp 的 dsDNA 噬菌体含有 81 个 CDS,但没有检测到抗生素抗性、整合酶或毒力基因的存在。对鉴定的 81 个 CDS 中的每一个进行 BLASTn 搜索,得到的同源物相似度较低。RNA 聚合酶和终止酶大亚基氨基酸序列的比较导致了一个新的噬菌体科的提出和接受,其中 4HA13 代表一个新的种和属。这种噬菌体的发现拓宽了我们对噬菌体多样性的现有认识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/39ffa8e4a74b/viruses-14-02356-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/93ad3628ed5b/viruses-14-02356-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/056bbf767799/viruses-14-02356-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/06f802e8e5a3/viruses-14-02356-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/0bcb691205aa/viruses-14-02356-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/700df1543922/viruses-14-02356-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/e5134ada1bf7/viruses-14-02356-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/c34a05577e19/viruses-14-02356-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/39ffa8e4a74b/viruses-14-02356-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/93ad3628ed5b/viruses-14-02356-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/056bbf767799/viruses-14-02356-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/06f802e8e5a3/viruses-14-02356-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/0bcb691205aa/viruses-14-02356-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/700df1543922/viruses-14-02356-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/e5134ada1bf7/viruses-14-02356-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/c34a05577e19/viruses-14-02356-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13d3/9699118/39ffa8e4a74b/viruses-14-02356-g008.jpg

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