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基于探针的实时 PCR 与 PCR-SSP 检测在泰国献血者 HLA-B*27 中的对比分析。

Comparative Analysis of a Developed Probe-Based Real-Time PCR and PCR-SSP for HLA-B*27 Detection among Thai Blood Donors.

出版信息

Clin Lab. 2022 Nov 1;68(11). doi: 10.7754/Clin.Lab.2022.220231.

DOI:10.7754/Clin.Lab.2022.220231
PMID:36377987
Abstract

BACKGROUND

The human leukocyte antigen (HLA) class I gene, the B locus, allele 27, HLA-B27 is one of the most fascinating risk factors that is strongly associated with developing spondyloarthropathies (SpA). HLA-B27 testing has been routinely available in the diagnosis of those diseases. This study aimed to develop a fluorogenic real-time PCR and to compare it with PCR-SSP to detect the HLA-B27 allele among Thai blood donors.

METHODS

A total of 391 DNA samples were obtained from Thai blood donors at Thammasat University Hospital and tested for HLA-B27 allele detection. A new real-time PCR was developed and validated to identify this allele and subsequently compared with those results tested with PCR-SSP. The sensitivity of detection was performed using known HLA-B27-positive and -negative samples with concentrations ranging from 0.001 to 100 ng/µL. Additionally, HLA-B27 subtyping was performed by DNA sequencing containing second and third exons of this gene among all the HLA-B*27-positive donors.

RESULTS

The validity of real-time PCR using known DNA controls and the results obtained by PCR-SSP techniques were in 100% concordance. The method was sensitive even at low DNA concentrations (1 ng/µL). Of 391 donors, 24 (6.14%; 95% CI, 3.97 - 9.00) were found to have the HLA-B27 allele, while the remaining 367 (93.86%; 95% CI, 91.00 - 96.03) did not have this allele. Donors presented HLA-B27-positive, HLA-B27:06, the most common allele, followed by HLA-B27:04, -B27:05, and -B27:07.

CONCLUSIONS

HLA-B*27 using fluorogenic real-time qualitative PCR was found to be superior compared with that of PCR-SSP. The method is rapid, accurate, reliable, and sensitive for detection. In addition, this method provides convenience in the early treatment of SpA patients and relieves their suffering.

摘要

背景

人类白细胞抗原(HLA)I 类基因 B 座,等位基因 27,HLA-B27 是与脊柱关节病(SpA)发展强烈相关的最引人注目的危险因素之一。HLA-B27 检测已常规用于这些疾病的诊断。本研究旨在开发一种荧光实时 PCR 并将其与 PCR-SSP 进行比较,以检测泰国献血者中的 HLA-B27 等位基因。

方法

从 Thammasat 大学医院的泰国献血者中获得了 391 个 DNA 样本,并对其 HLA-B27 等位基因检测进行了测试。开发了一种新的实时 PCR 并对其进行了验证,以鉴定该等位基因,并随后与使用 PCR-SSP 测试的结果进行了比较。使用浓度范围为 0.001 至 100 ng/µL 的已知 HLA-B27 阳性和阴性样本进行了检测灵敏度。此外,对所有 HLA-B*27 阳性供体的该基因第二和第三外显子进行了 HLA-B27 亚型分析。

结果

使用已知 DNA 对照和 PCR-SSP 技术获得的实时 PCR 有效性完全一致。即使在低 DNA 浓度(1 ng/µL)时,该方法也具有很高的灵敏度。在 391 名供体中,发现 24 名(6.14%;95%置信区间,3.97-9.00)具有 HLA-B27 等位基因,而其余 367 名(93.86%;95%置信区间,91.00-96.03)没有该等位基因。供体表现出 HLA-B27 阳性,HLA-B27:06 是最常见的等位基因,其次是 HLA-B27:04、-B27:05 和 -B27:07。

结论

使用荧光实时定性 PCR 的 HLA-B*27 被发现优于 PCR-SSP。该方法快速、准确、可靠且灵敏。此外,该方法为 SpA 患者的早期治疗提供了便利,并减轻了他们的痛苦。

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