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PortaLyzer是一种DIY工具,可用于在野外提取环境DNA。

The PortaLyzer, a DIY tool that allows environmental DNA extraction in the field.

作者信息

Peck Charlie, Jackobs Faith, Smith Emmett

机构信息

Computer Science - Earlham College, 801 National Road West, Richmond, IN 47374, United States.

Quantitative and Computational Biosciences Program, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX 77030, United States.

出版信息

HardwareX. 2022 Oct 27;12:e00373. doi: 10.1016/j.ohx.2022.e00373. eCollection 2022 Oct.

Abstract

The PortaLyzer is a portable homemade device that allows researchers to perform bead-beating steps commonly found in environmental DNA (eDNA) extraction protocols in the field without access to power. This allows researchers to preserve organism abundance by beginning eDNA extraction quickly. The PortaLyzer is composed of a variable speed, battery-powered multi-tool and a vortexer adapter plate. We used the PortaLyzer, in conjunction with the Qiagen DNEasy PowerSoil Pro kit, to successfully field process samples taken from the forelands of the Sólheimajökull and Kvíárjökull glaciers in Iceland, as well as soil samples acquired from a prairie in Indiana. Additionally, we provide evidence that samples held in Buffer CD2 of the DNEasy PowerSoil Pro Kit may be transported to traditional lab spaces and processed up to one month after the initial protocol steps, and still provide an equivalent DNA quality and abundance yield as those processed the same day. These improvements to DNA extraction protocols give researchers more flexibility while sampling, shipping and processing eDNA samples.

摘要

PortaLyzer是一种便携式自制设备,它能让研究人员在野外无需外接电源的情况下,完成环境DNA(eDNA)提取方案中常见的珠磨步骤。这使得研究人员能够通过快速开始eDNA提取来保存生物丰度。PortaLyzer由一个变速、电池供电的多功能工具和一个涡旋适配器板组成。我们将PortaLyzer与Qiagen DNEasy PowerSoil Pro试剂盒结合使用,成功地对从冰岛索尔黑马冰川和克维亚尔冰川前缘采集的样本以及从印第安纳州一片草原获取的土壤样本进行了野外处理。此外,我们提供的证据表明,DNEasy PowerSoil Pro试剂盒中保存在缓冲液CD2中的样本可以被运送到传统实验室空间,并在初始方案步骤后的一个月内进行处理,而且仍能提供与当天处理的样本相当的DNA质量和产量。这些对DNA提取方案的改进,让研究人员在对eDNA样本进行采样、运输和处理时拥有更大的灵活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f1c8/9644035/53b1a40bc6f5/ga1.jpg

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