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在冰帽穿越探险中进行完全离网和太阳能驱动的微生物群落 DNA 测序。

Entirely Off-Grid and Solar-Powered DNA Sequencing of Microbial Communities during an Ice Cap Traverse Expedition.

机构信息

Vatnajökull Expedition Team, UK.

Imperial College Centre for Synthetic Biology (IC-CSynB), Imperial College London, London SW7 2AZ, UK.

出版信息

Genes (Basel). 2019 Nov 7;10(11):902. doi: 10.3390/genes10110902.

Abstract

Microbial communities in remote locations remain under-studied. This is particularly true on glaciers and icecaps, which cover approximately 11% of the Earth's surface. The principal reason for this is the inaccessibility of most of these areas due to their extreme isolation and challenging environmental conditions. While remote research stations have significantly lowered the barrier to studying the microbial communities on icecaps, their use has led to a bias for data collection in the near vicinity of these institutions. Here, miniaturisation of a DNA sequencing lab suitable for off-grid metagenomic studies is demonstrated. Using human power alone, this lab was transported across Europe's largest ice cap (Vatnajökull, Iceland) by ski and sledge. After 11 days of unsupported polar-style travel, a metagenomic study of a geothermal hot spring gorge was conducted on the remote northern edge of the ice cap. This tent-based metagenomic study resulted in over 24 h of Nanopore sequencing, powered by solar power alone. This study demonstrates the ability to conduct DNA sequencing in remote locations, far from civilised resources (mechanised transport, external power supply, internet connection, etc.), whilst greatly reducing the time from sample collection to data acquisition.

摘要

偏远地区的微生物群落仍未得到充分研究。这在冰川和冰帽上尤其如此,它们覆盖了地球表面的约 11%。造成这种情况的主要原因是由于这些地区极端孤立和具有挑战性的环境条件,大多数地区都难以到达。虽然远程研究站极大地降低了研究冰帽上微生物群落的门槛,但它们的使用导致了在这些机构附近进行数据收集的偏向。在这里,展示了一种适合离网宏基因组研究的微型化 DNA 测序实验室。仅使用人力,该实验室就通过滑雪和雪橇穿越了欧洲最大的冰帽(冰岛瓦特纳冰川)。在无人支持的极地风格旅行 11 天后,在冰帽的偏远北部边缘对一个地热温泉峡谷进行了宏基因组研究。这项基于帐篷的宏基因组研究产生了超过 24 小时的 Nanopore 测序,仅由太阳能供电。这项研究展示了在远离文明资源(机械化运输、外部电源、互联网连接等)的偏远地区进行 DNA 测序的能力,同时大大缩短了从样本采集到数据采集的时间。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2074/6896169/18199502251e/genes-10-00902-g001.jpg

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