Semaan Mikhael T, Crutchfield James P
Complexity Sciences Center and Department of Physics and Astronomy, University of California, Davis, One Shields Avenue, Davis, California 95616, USA.
Phys Rev E. 2022 Oct;106(4-1):044410. doi: 10.1103/PhysRevE.106.044410.
Stochastic thermodynamics has largely succeeded in characterizing both equilibrium and far-from-equilibrium phenomena. Yet many opportunities remain for application to mesoscopic complex systems-especially biological ones-whose effective dynamics often violate detailed balance and whose microscopic degrees of freedom are often unknown or intractable. After reviewing excess and housekeeping energetics-the adaptive and homeostatic components of a system's dissipation-we extend stochastic thermodynamics with a trajectory class fluctuation theorem for nonequilibrium steady-state, nondetailed-balanced complex systems. We then take up the neurobiological examples of voltage-gated sodium and potassium ion channels to apply and illustrate the theory, elucidating their nonequilibrium behavior under a biophysically plausible action potential drive. These results uncover challenges for future experiments and highlight the progress possible understanding the thermodynamics of complex systems-without exhaustive knowledge of every underlying degree of freedom.
随机热力学在很大程度上成功地刻画了平衡态和远离平衡态的现象。然而,将其应用于介观复杂系统(尤其是生物系统)仍有许多机会,这些系统的有效动力学常常违反细致平衡,其微观自由度往往未知或难以处理。在回顾了过剩能量和维持能量(系统耗散的适应性和稳态成分)之后,我们用一个针对非平衡稳态、非细致平衡复杂系统的轨迹类涨落定理扩展了随机热力学。然后,我们以电压门控钠通道和钾通道的神经生物学实例来应用和阐释该理论,阐明它们在生物物理上合理的动作电位驱动下的非平衡行为。这些结果揭示了未来实验面临的挑战,并突出了在不完全了解每一个潜在自由度的情况下理解复杂系统热力学的可能进展。