Sarmiento-Vizcaíno Aida, Martín Jesús, Ortiz-López Francisco Javier, Reyes Fernando, García Luis A, Blanco Gloria
Departamento de Biología Funcional Área de Microbiología Universidad de Oviedo, Oviedo, Spain.
Instituto Universitario de Oncología del Principado de Asturias, Universidad de Oviedo, Oviedo, Spain.
Front Chem. 2022 Nov 3;10:948795. doi: 10.3389/fchem.2022.948795. eCollection 2022.
Actinobacteria, mostly species, are the main source of natural products essential in medicine. While the majority of producer microorganisms of secondary metabolite are reported from terrestrial or marine environments, there are limited reports of their isolation from atmospheric precipitations. Clouds are considered as atmospheric oases for microorganisms and there is a recent paradigm shift whereby atmospheric-derived Actinobacteria emerge as an alternative source for drug discovery. In this context, we studied a total of 18 bioactive Actinobacteria strains, isolated by sampling nine precipitation events with prevailing Northern winds in the Cantabrian Sea coast, Northern Spain. Backward trajectories meteorological analyses indicate that air masses were originated mostly in the Arctic Ocean, and their trajectory to downwind areas involved the Atlantic Ocean and also terrestrial sources from continental Europe, and in some events from Canada, Greenland, Mauritania and Canary Islands. Taxonomic identification of the isolates, by 16S rRNA gene sequencing and phylogenetic analyses, revealed that they are members of three Actinobacteria genera. Fifteen of the isolates are species, thus increasing the number of bioactive species of this genus in the atmosphere to a 6.8% of the total currently validated species. In addition, two of the strains belong to the genus and one to genus . These findings reinforce a previous atmospheric dispersal model, extended herein to the genus . Production of bioactive secondary metabolites was screened in ethyl acetate extracts of the strains by LC-UV-MS and a total of 94 secondary metabolites were detected after LC/MS dereplication. Comparative analyses with natural products databases allowed the identification of 69 structurally diverse natural products with contrasted biological activities, mostly as antibiotics and antitumor agents, but also anti-inflammatory, antiviral, antiparasitic, immunosuppressant and neuroprotective among others. The molecular formulae of the 25 remaining compounds were determined by HRMS. None of these molecules had been previously reported in natural product databases indicating potentially novel metabolites. As a proof of concept, a new metabolite caboxamycin B (1) was isolated from the culture broth of sp. A-177 and its structure was determined by various spectrometric methods. To the best of our knowledge, this is the first novel natural product obtained from an atmospheric , thus pointing out precipitations as an innovative source for discovering new pharmaceutical natural products.
放线菌大多为 物种,是医学中重要天然产物的主要来源。虽然大多数次生代谢产物的产生微生物是从陆地或海洋环境中分离得到的,但从大气降水中分离出它们的报道却很有限。云被认为是微生物的大气绿洲,最近出现了一种范式转变,即源自大气的放线菌成为药物发现的替代来源。在此背景下,我们研究了总共18株具有生物活性的放线菌菌株,这些菌株是通过在西班牙北部坎塔布连海沿岸对9次盛行北风的降水事件进行采样分离得到的。气象学的后向轨迹分析表明,气团大多起源于北冰洋,其向下风向地区的轨迹涉及大西洋以及欧洲大陆的陆地来源,在某些情况下还涉及加拿大、格陵兰、毛里塔尼亚和加那利群岛。通过16S rRNA基因测序和系统发育分析对分离菌株进行分类鉴定,结果表明它们是三个放线菌属的成员。其中15株分离菌为 物种,从而使该属在大气中的生物活性物种数量增加到目前已验证物种总数的6.8%。此外,其中两株菌株属于 属,一株属于 属。这些发现强化了先前的大气扩散模型,在此将其扩展到 属。通过LC - UV - MS对菌株的乙酸乙酯提取物进行生物活性次生代谢产物的筛选,LC/MS去重复后共检测到94种次生代谢产物。与天然产物数据库进行比较分析,鉴定出69种结构多样、具有不同生物活性的天然产物,主要作为抗生素和抗肿瘤剂,但也具有抗炎、抗病毒、抗寄生虫、免疫抑制和神经保护等活性。其余25种化合物的分子式通过高分辨质谱(HRMS)确定。这些分子在天然产物数据库中均未被先前报道,表明可能是新的代谢产物。作为概念验证,从 属菌株A - 177的培养液中分离出一种新的代谢产物卡波沙霉素B(1),并通过各种光谱方法确定了其结构。据我们所知,这是从大气中获得的首个新型天然产物,从而指出降水是发现新型药用天然产物的创新来源。