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Bioinformatics Analysis to Find Novel Biomarkers for Coronary Heart Disease.

作者信息

Gholipour Akram, Shakerian Farshad, Zahedmehr Ali, Irani Shiva, Malakootian Mahshid, Mowla Seyed Javad

机构信息

Department of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran.

Cardiogenetic Research Center, Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran.

出版信息

Iran J Public Health. 2022 May;51(5):1152-1160. doi: 10.18502/ijph.v51i5.9430.


DOI:10.18502/ijph.v51i5.9430
PMID:36407720
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9643247/
Abstract

BACKGROUND: Coronary heart disease (CHD), a major cause of death worldwide, is defined as a narrowing or blockage of the coronary arteries that supply oxygen and blood to the heart. We aimed to find potential biomarkers for coronary artery disease, by comparing the expression profile of blood exosomes of both normal and CHD samples. METHODS: Datasets of 6 CHD and 6 normal samples of blood exosomes were downloaded, and differentially expressed RNAs, with adjusted <0.01 and log2FoldChange≥1 were achieved. Moreover, gene ontology (GO) and pathway analysis were accomplished by PANTHER database for datasets. RESULTS: Our data analysis found 119 differentially expressed genes between two datasets. By comparing transcriptome profiles, we candidate the highest downregulated gene, and the highest upregulated one as specific biomarkers for CHD Furthermore, GO and pathway analysis depicted that aforementioned differentially expressed genes are mostly involved in different molecular metabolic process, inflammation, immune system process and response to stimulus pathways which all cause cardiovascular diseases. CONCLUSION: We have provided new potential biomarkers for CHD, though experimental validation is still needed to confirm the suitability of the candidate genes for early detection of CHD.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab7/9643247/09c7b98848bb/IJPH-51-1152-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab7/9643247/2e2364b7f59a/IJPH-51-1152-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab7/9643247/7e119f069019/IJPH-51-1152-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab7/9643247/3b2dc30bd3e1/IJPH-51-1152-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab7/9643247/09c7b98848bb/IJPH-51-1152-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab7/9643247/2e2364b7f59a/IJPH-51-1152-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab7/9643247/7e119f069019/IJPH-51-1152-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab7/9643247/3b2dc30bd3e1/IJPH-51-1152-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab7/9643247/09c7b98848bb/IJPH-51-1152-g004.jpg

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Bioinformatics Analysis to Find Novel Biomarkers for Coronary Heart Disease.

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本文引用的文献

[1]
Small Molecules with Big Impacts on Cardiovascular Diseases.

Biochem Genet. 2020-6

[2]
Novel Invasive and Noninvasive Cardiac-Specific Biomarkers in Obesity and Cardiovascular Diseases.

Metab Syndr Relat Disord. 2020-2

[3]
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Nucleic Acids Res. 2018-1-4

[7]
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Int J Genomics. 2018-2-11

[8]
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Acta Pharmacol Sin. 2017-12-7

[9]
The Diagnosis of Chronic Coronary Heart Disease.

Dtsch Arztebl Int. 2017-10-20

[10]
Novel spliced variants of OCT4, OCT4C and OCT4C1, with distinct expression patterns and functions in pluripotent and tumor cell lines.

Eur J Cell Biol. 2017-6

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