从淡水池塘分离出的两种捕食性细菌菌株HI3菌和MH1菌的全基因组序列
Complete Genome Sequences of Two Predatory Bacterial Strains, sp. HI3 and sp. MH1, Isolated from a Freshwater Pond.
作者信息
Inoue Daisuke, Hiroshima Naoto, Ishizawa Hidehiro, Dohra Hideo, Ike Michihiko
机构信息
Division of Sustainable Energy and Environmental Engineering, Osaka University, Suita, Osaka, Japan.
Department of Applied Chemistry, University of Hyogo, Himeji, Hyogo, Japan.
出版信息
Microbiol Resour Announc. 2022 Dec 15;11(12):e0114622. doi: 10.1128/mra.01146-22. Epub 2022 Nov 21.
Abstract
We report the complete genome sequences of two predatory bacterial strains, sp. HI3 and sp. MH1, which were isolated from a freshwater pond. These two strains are grouped with the and like organisms and myxobacteria, respectively. Their genomes expand our knowledge of the characteristics of predatory bacteria.
摘要
我们报告了从一个淡水池塘中分离出的两种捕食性细菌菌株，即HI3菌株和MH1菌株的完整基因组序列。这两种菌株分别与吞噬菌和类吞噬菌以及粘细菌归为一类。它们的基因组扩展了我们对捕食性细菌特征的认识。
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本文引用的文献
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2
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes.
Nucleic Acids Res. 2021 Sep 20;49(16):9077-9096. doi: 10.1093/nar/gkab688.
3
The Functional Significance of Bacterial Predators.
mBio. 2021 Apr 27;12(2):e00466-21. doi: 10.1128/mBio.00466-21.
4
Biotechnological Potential of and Like Organisms and Their Secreted Enzymes.
Front Microbiol. 2020 Apr 15;11:662. doi: 10.3389/fmicb.2020.00662. eCollection 2020.
5
Assembly of long, error-prone reads using repeat graphs.
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
6
Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes.
Genome Res. 2018 Jul;28(7):1079-1089. doi: 10.1101/gr.230615.117. Epub 2018 May 17.
7
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
8
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
9
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.
Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.
10
MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes.
DNA Res. 2008 Dec;15(6):387-96. doi: 10.1093/dnares/dsn027. Epub 2008 Oct 21.
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