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基于双特异性核酸酶的电化学生物传感器用于检测 SARS-CoV-2 RdRp RNA。

A duplex-specific nuclease based electrochemical biosensor for the assay of SARS-CoV-2 RdRp RNA.

机构信息

Department of Laboratory Medicine, Jiangyin Hospital of Traditional Chinese Medicine (Jiangyin Hospital Affiliated to Nanjing University of Chinese Medicine), Jiangyin, Jiangsu, China.

Department of Laboratory Medicine, Jiangyin Fifth People's Hospital, Jiangyin, Jiangsu, China.

出版信息

Anal Biochem. 2023 Jan 15;661:114983. doi: 10.1016/j.ab.2022.114983. Epub 2022 Nov 21.

Abstract

We present a method for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) detection based on the dual amplification effect of duplex-specific nuclease (DSN). In this scheme, we cleverly employed a 2-OMe-RNA modified DNA to prevent hairpin nucleic acid from being digested by DSN. The target RNA and 2-OMe-RNA are released when DSN cleaves just the double-stranded RNA/hairpin nucleic acid DNA. The target RNA then forms a circular reaction when it hybridizes with another hairpin nucleic acid. Simultaneously, the released target 2-OMe-RNA turns on the hairpin DNA2 on the electrode surface, and when the DSN cleaves the DNA in the hairpin DNA2/2-OMe-RNA duplex, the 2-OMe-RNA is released and hybridized with the other hairpin DNA2. The hairpin DNA2 on the electrode surface is split off after many cycles, exposing the gold electrode surface. As a consequence, there is more K[Fe(CN)]/K[Fe(CN)] redox near to the electrode surface, and the electrochemical signal increases. As a result, the change in electrochemical signal may be used to calculate the quantity of RNA that has to be measured. The protocol has good sensitivity in the detection of SARS-CoV-2: the detection limit reached 21.69 aM. This protocol provides an effective solution for the highly sensitive screening of SARS-CoV-2.

摘要

我们提出了一种基于双链特异性核酸酶(DSN)双重扩增效应的严重急性呼吸综合征冠状病毒 2(SARS-CoV-2)检测方法。在该方案中,我们巧妙地使用了 2'-O-甲氧基修饰的 DNA 来防止发夹核酸被 DSN 消化。当 DSN 仅切割双链 RNA/发夹核酸 DNA 时,靶 RNA 和 2'-O-甲氧基 RNA 被释放。然后,当靶 RNA 与另一个发夹核酸杂交时,它会形成一个环状反应。同时,释放的靶 2'-O-甲氧基 RNA 会打开电极表面上的发夹 DNA2,当 DSN 切割发夹 DNA2/2'-O-甲氧基 RNA 双链中的 DNA 时,2'-O-甲氧基 RNA 被释放并与另一个发夹 DNA2 杂交。经过多次循环后,电极表面上的发夹 DNA2 被分裂,暴露出金电极表面。因此,电极表面附近的 K[Fe(CN)]/K[Fe(CN)]氧化还原对更多,电化学信号增加。因此,电化学信号的变化可用于计算要测量的 RNA 的量。该方案在 SARS-CoV-2 的检测中具有良好的灵敏度:检测限达到 21.69 aM。该方案为 SARS-CoV-2 的高灵敏度筛选提供了有效的解决方案。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/565a/9676167/25387de79193/ga1_lrg.jpg

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