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[胞外DNA在粪肠球菌生物膜结构中的作用以及酶和抗生素在生物膜根除中的应用效率研究]

[The Role of eDNA in Biofilm Structure of Enterococcus faecalis and Investigation of the Efficiency of Enzyme and Antibiotic Application in Biofilm Eradication].

作者信息

Güneş Burak, Akçelik Nefise

机构信息

Ankara University Biotechnology Institute, Ankara, Türkiye.

出版信息

Mikrobiyol Bul. 2022 Oct;56(4):606-619. doi: 10.5578/mb.20229602.

Abstract

Biofilm structures, which are the predominant form of microbial life, are a formation that allows pathogenic microorganisms to remain alive by colonizing in different tissues and organs in the human body, as well as on inanimate surfaces. One of the important criteria in the fight against biofilm structures is the weakening of the exopolymeric matrix (EPS). Although it is known that extracellular DNA (eDNA) is one of the most abundant macromolecules in EPS in enterococcal biofilms, its function in biofilm structure is controversial. Since biofilm-forming enterococci are more resistant to antibiotics, the use of antibiotics together with agents that will damage the biofilm structure is being investigated. In this study, it was aimed to target eDNA with enzyme application for the eradication of Enterococcus faecalis biofilm structures and to investigate the increase of the effectiveness of antibiotic therapy on it. The amount of eDNA and optimal production time in biofilm structures of four different strains and isolates of E.faecalis (two clinical isolates coded 74 and 114, and two control strains coded ATCC 29212 and ATCC OG1RF) were determined by spectrophotometric measurement of PicoGreen fluorescence. For the eradication of biofilm; the effects of kanamycin, tetracycline, nalidixic acid, and ampicillin alone and in combination with Benzonase® and DNase I enzymes were investigated by viable cell count on Tryptic Soy Agar. It was determined that optimum biofilm production of E.faecalis strains and isolates occurred at 37°C for 12 hours. E.faecalis 114 isolate was identified as the strongest biofilm producer among the tested bacteria and the isolate containing the highest amount of eDNA (286 98 ng/µl) in the biofilm structure. While the tested antibiotics did not show significant antibiofilm activity against E.faecalis biofilm structures alone, strong antibiofilm activity was detected when ampicillin and tetracycline were applied together with DNase I enzyme. In this study, the use of DNA-degrading enzyme/antibiotic combinations in the eradication of enterococcal biofilms and the effectiveness of these combinations against eDNA were investigated for the first time in the literature. As a result, supportive results were obtained that the use of antibiotics together with the DNase I enzyme targeting the DNA molecule in the EPS structure will be more successful in the fight against the biofilm structures of E.faecalis, which is an important cause of nosocomial infection. These results need to be supported by further clinical studies.

摘要

生物膜结构是微生物生命的主要形式,它是一种使致病微生物能够通过在人体不同组织和器官以及无生命表面定殖而存活的结构。对抗生物膜结构的重要标准之一是削弱胞外聚合物基质(EPS)。虽然已知细胞外DNA(eDNA)是肠球菌生物膜中EPS中最丰富的大分子之一,但其在生物膜结构中的功能仍存在争议。由于形成生物膜的肠球菌对抗生素更具抗性,因此正在研究将抗生素与破坏生物膜结构的药物联合使用。在本研究中,旨在通过酶应用靶向eDNA以根除粪肠球菌生物膜结构,并研究抗生素治疗对其有效性的提高。通过对PicoGreen荧光进行分光光度测量,确定了四种不同菌株和分离株(两种临床分离株编号为74和114,两种对照菌株编号为ATCC 29212和ATCC OG1RF)的粪肠球菌生物膜结构中eDNA的含量和最佳产生时间。为了根除生物膜,通过在胰蛋白胨大豆琼脂上进行活菌计数,研究了卡那霉素、四环素、萘啶酸和氨苄青霉素单独使用以及与Benzonase®和DNase I酶联合使用的效果。确定粪肠球菌菌株和分离株的最佳生物膜产生在37°C下持续12小时。粪肠球菌114分离株被鉴定为测试细菌中最强的生物膜产生者,并且是生物膜结构中eDNA含量最高的分离株(286 98 ng/µl)。虽然测试的抗生素单独对粪肠球菌生物膜结构没有显示出显著的抗生物膜活性,但当氨苄青霉素和四环素与DNase I酶联合使用时,检测到了强烈的抗生物膜活性。在本研究中,首次在文献中研究了DNA降解酶/抗生素组合在根除肠球菌生物膜中的应用以及这些组合对eDNA的有效性。结果获得了支持性结果,即抗生素与靶向EPS结构中DNA分子的DNase I酶联合使用在对抗作为医院感染重要原因的粪肠球菌生物膜结构方面将更成功。这些结果需要进一步的临床研究来支持。

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