儿童 FSGS FFPE 组织的比较蛋白质组学分析。

Comparative proteomic analysis of children FSGS FFPE tissues.

机构信息

Department of Nephrology, Children's Hospital of Fudan University, National Pediatric Medical Center of China, Shanghai, China.

Kidney Development and Pediatric Kidney Disease Research Center, Shanghai, China.

出版信息

BMC Pediatr. 2022 Dec 12;22(1):707. doi: 10.1186/s12887-022-03764-7.

Abstract

BACKGROUND

In children, focal segmental glomerulosclerosis (FSGS) is the main cause of steroid resistant nephrotic syndrome (SRNS). To identify specific candidates and the mechanism of steroid resistance, we examined the formalin-fixed paraffin embedded (FFPE) renal tissue protein profiles via liquid chromatography tandem mass spectrometry (LC-MS/MS).

METHODS

Renal biopsies from seven steroid-sensitive (SS) and eleven steroid-resistant (SR) children FSGS patients were obtained. We examined the formalin-fixed paraffin embedded (FFPE) renal tissue protein profiles via liquid chromatography tandem mass spectrometry (LC-MS/MS). Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment and Gene Ontology (GO) analysis, as well as the construction of protein-protein interaction (PPI) network were performed. Two proteins were further valiadated by immunohistochemistry staining in FSGS patients and mice models.

RESULTS

In total, we quantified more than 4000 proteins, of which 325 were found to be differentially expressed proteins (DEPs) between the SS and SR group (foldchange ≥2, P<0.05). The results of GO revealed that the most significant up-regulated proteins were primarily related to protein transportation, regulation of the complement activation process and cytolysis. Moreover, clustering analysis showed differences in the pathways (lysosome, terminal pathway of complement) between the two groups. Among these potential candidates, validation analyses for LAMP1 and ACSL4 were conducted. LAMP1 was observed to have a higher expression in glomerulus, while ACSL4 was expressed more in tubular epithelial cells.

CONCLUSIONS

In this study, the potential mechanism and candidates related to steroid resistance in children FSGS patients were identified. It could be helpful in identifying potential therapeutic targets and predicting outcomes with these proteomic changes for children FSGS patients.

摘要

背景

在儿童中,局灶节段性肾小球硬化症(FSGS)是导致激素抵抗性肾病综合征(SRNS)的主要原因。为了确定特定的候选物和激素抵抗的机制,我们通过液相色谱串联质谱法(LC-MS/MS)检测了福尔马林固定石蜡包埋(FFPE)肾组织的蛋白质谱。

方法

我们从 7 名激素敏感(SS)和 11 名激素抵抗(SR)的儿童 FSGS 患者中获得了肾活检组织。我们通过液相色谱串联质谱法(LC-MS/MS)检测了福尔马林固定石蜡包埋(FFPE)肾组织的蛋白质谱。进行了京都基因与基因组百科全书(KEGG)富集和基因本体论(GO)分析,以及蛋白质-蛋白质相互作用(PPI)网络的构建。进一步通过 FSGS 患者和小鼠模型的免疫组织化学染色验证了两种蛋白质。

结果

我们总共定量了 4000 多种蛋白质,其中 325 种被鉴定为 SS 和 SR 组之间差异表达的蛋白质(foldchange≥2,P<0.05)。GO 的结果表明,上调最显著的蛋白质主要与蛋白质运输、补体激活过程的调节和细胞溶解有关。此外,聚类分析显示两组之间的途径(溶酶体、补体终末途径)存在差异。在这些潜在的候选物中,对 LAMP1 和 ACSL4 进行了验证分析。在肾小球中观察到 LAMP1 表达较高,而在肾小管上皮细胞中表达较高的 ACSL4。

结论

在这项研究中,确定了与儿童 FSGS 患者激素抵抗相关的潜在机制和候选物。这些蛋白质组学变化可能有助于识别潜在的治疗靶点,并预测儿童 FSGS 患者的结局。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/add3/9743561/d1dd92dcf0c4/12887_2022_3764_Fig1_HTML.jpg

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