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结构功能研究表明 ComEA 含有一个寡聚化结构域,该结构域对于革兰氏阳性菌的转化是必需的。

Structure-function studies reveal ComEA contains an oligomerization domain essential for transformation in gram-positive bacteria.

机构信息

Department of Microbiology, Biochemistry, and Molecular Genetics, New Jersey Medical School, Rutgers Biomedical Health Sciences, Newark, NJ, 07103, USA.

Public Health Research Institute, Rutgers Biomedical Health Sciences, Newark, NJ, 07103, USA.

出版信息

Nat Commun. 2022 Dec 13;13(1):7724. doi: 10.1038/s41467-022-35129-0.

Abstract

An essential step in bacterial transformation is the uptake of DNA into the periplasm, across the thick peptidoglycan cell wall of Gram-positive bacteria, or the outer membrane and thin peptidoglycan layer of Gram-negative bacteria. ComEA, a DNA-binding protein widely conserved in transformable bacteria, is required for this uptake step. Here we determine X-ray crystal structures of ComEA from two Gram-positive species, Bacillus subtilis and Geobacillus stearothermophilus, identifying a domain that is absent in Gram-negative bacteria. X-ray crystallographic, genetic, and analytical ultracentrifugation (AUC) analyses reveal that this domain drives ComEA oligomerization, which we show is required for transformation. We use multi-wavelength AUC (MW-AUC) to characterize the interaction between DNA and the ComEA DNA-binding domain. Finally, we present a model for the interaction of the ComEA DNA-binding domain with DNA, suggesting that ComEA oligomerization may provide a pulling force that drives DNA uptake across the thick cell walls of Gram-positive bacteria.

摘要

在细菌转化过程中,一个关键步骤是将 DNA 摄取到周质空间中,这需要穿过革兰氏阳性菌厚实的肽聚糖细胞壁,或者革兰氏阴性菌的外膜和薄肽聚糖层。ComEA 是一种在可转化细菌中广泛保守的 DNA 结合蛋白,是这一摄取步骤所必需的。在这里,我们确定了来自两种革兰氏阳性菌枯草芽孢杆菌和嗜热脂肪芽孢杆菌的 ComEA 的 X 射线晶体结构,鉴定出了一个在革兰氏阴性菌中不存在的结构域。X 射线晶体学、遗传学和分析超速离心(AUC)分析表明,这个结构域驱动 ComEA 寡聚化,我们证明这对于转化是必需的。我们使用多波长 AUC(MW-AUC)来表征 DNA 与 ComEA DNA 结合结构域的相互作用。最后,我们提出了 ComEA DNA 结合结构域与 DNA 相互作用的模型,表明 ComEA 寡聚化可能提供一种拉力,推动 DNA 穿过革兰氏阳性菌厚实的细胞壁摄取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1552/9747964/12185c31da84/41467_2022_35129_Fig1_HTML.jpg

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