Zhao Guangjian, Zheng Jianpei, Tang Kai, Chen Qi
Fujian Key Laboratory of Innate Immune Biology, Biomedical Research Center of South China, Fujian Normal University Qishan Campus, Fuzhou, China.
Front Genet. 2022 Dec 5;13:1058207. doi: 10.3389/fgene.2022.1058207. eCollection 2022.
EMILIN2 is a platelet-associated elastin that regulates angiogenesis. It has recently been found to play an essential role in various tumors. Nevertheless, the mechanism of action of EMILIN2 in clear cell renal cell carcinoma (ccRCC) remains unclear. Samples from 33 cancers were obtained from UCSC Xena and The Cancer Genome Atlas (TCGA) database. The relationship between EMILIN2 expression and the clinicopathological characteristics and immune infiltration of ccRCC was investigated. Nonnegative matrix factorization (NMF) was used to classify ccRCC patients. A multigene risk prediction model of ccRCC was constructed using LASSO regression and multivariate regression analysis. A nomogram survival probability prediction map and calibration curve were constructed based on clinical information. EMILIN2 is significantly overexpressed in ccRCC, a phenomenon that is associated with poor prognosis. Meanwhile, EMILIN2 expression is closely related to tumor immune infiltration in ccRCC. Patients with clear cell renal cell carcinoma were divided into two subtypes using NMF, with subtype 2 showed poor prognosis. Next, we established a risk score model for ccRCC based on the common differentially expressed genes (DEGs) between subtypes and groups based on EMILIN2 expression. The results indicated poor prognosis in the high-risk group in the training set and were confirmed in the validation set. Our findings suggest that EMILIN2 expression is closely associated with immune infiltration in ccRCC. EMILIN2 expression is negatively correlated with the prognosis of ccRCC patients. Here, we developed a tool that could predict the prognosis of ccRCC patients.
EMILIN2是一种与血小板相关的弹性蛋白,可调节血管生成。最近发现它在各种肿瘤中起着至关重要的作用。然而,EMILIN2在透明细胞肾细胞癌(ccRCC)中的作用机制仍不清楚。从加州大学圣克鲁兹分校的Xena数据库和癌症基因组图谱(TCGA)数据库中获取了33例癌症样本。研究了EMILIN2表达与ccRCC临床病理特征及免疫浸润之间的关系。采用非负矩阵分解(NMF)对ccRCC患者进行分类。利用LASSO回归和多变量回归分析构建了ccRCC的多基因风险预测模型。根据临床信息构建了列线图生存概率预测图和校准曲线。EMILIN2在ccRCC中显著过表达,这一现象与预后不良相关。同时,EMILIN2表达与ccRCC中的肿瘤免疫浸润密切相关。采用NMF将透明细胞肾细胞癌患者分为两个亚型,其中2型预后较差。接下来,我们基于基于EMILIN2表达的亚型和组间的共同差异表达基因(DEG)建立了ccRCC的风险评分模型。结果表明,训练集中高危组预后较差,并在验证集中得到证实。我们的研究结果表明,EMILIN2表达与ccRCC中的免疫浸润密切相关。EMILIN2表达与ccRCC患者的预后呈负相关。在此,我们开发了一种可以预测ccRCC患者预后的工具。