Ding Hengwu, Han Shiyun, Ye Yuanxin, Bi De, Zhang Sijia, Yi Ran, Gao Jinming, Yang Jianke, Wu Longhua, Kan Xianzhao
Anhui Provincial Key Laboratory of the Conservation and Exploitation of Biological Resources, College of Life Sciences, Anhui Normal University, Wuhu 241000, China.
College of Landscape Engineering, Suzhou Polytechnic Institute of Agriculture, Suzhou 215000, China.
Biology (Basel). 2022 Dec 7;11(12):1779. doi: 10.3390/biology11121779.
The genus is the second-largest genus in the family Crassulaceae, with about 200 species. As an acknowledged super-barcode, plastomes have been extensively utilized for plant evolutionary studies. Here, we first report 10 new plastomes of . We further focused on the structural characterizations, codon usage, aversion patterns, and evolutionary rates of plastomes. The IR junction patterns-IRb had 110 bp expansion to -were conservative among species. Interestingly, we found the codon usage patterns of gene in species are unique among Crassulaceae species with elevated ENC values. Furthermore, subgenus species have specific GC-biases in the gene. In addition, the codon aversion motifs from , , and contained phylogenetic implications within . The evolutionary rates analyses indicated all plastid genes of Crassulaceae were under the purifying selection. Among plastid genes, and were the most rapidly evolving genes, whereas was the most conserved gene. Additionally, our phylogenetic analyses strongly supported that is sister to all other Crassulaceae species. Our findings will be useful for further evolutionary studies within the and Crassulaceae.
该属是景天科中第二大属,约有200个物种。作为公认的超级条形码,质体基因组已被广泛用于植物进化研究。在此,我们首次报道了该属的10个新质体基因组。我们进一步关注质体基因组的结构特征、密码子使用、偏好模式和进化速率。IR连接模式——IRb向……有110 bp的扩展——在该属物种中是保守的。有趣的是,我们发现该属物种中某基因的密码子使用模式在景天科物种中是独特的,其ENC值升高。此外,该属亚属物种在某基因中具有特定的GC偏好。此外,来自该属某些物种的密码子偏好基序在该属内具有系统发育意义。进化速率分析表明景天科所有质体基因都受到纯化选择。在质体基因中,某基因和某基因是进化最快的基因,而某基因是最保守的基因。此外,我们的系统发育分析有力地支持该属是所有其他景天科物种的姐妹群。我们的研究结果将有助于该属和景天科内的进一步进化研究。