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水平转移与两个 DD34E 转座子(和)在脊椎动物中的进化特征。

Horizontal Transfer and Evolutionary Profiles of Two DD34E Transposons ( and ) in Vertebrates.

机构信息

College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.

Shanghai Cell Therapy Group, Shanghai 201805, China.

出版信息

Genes (Basel). 2022 Nov 29;13(12):2239. doi: 10.3390/genes13122239.

Abstract

Both ZeBrafish (), a recently identified DNA transposon in the zebrafish genome, and , a reconstructed transposon originally discovered in several fish species, are known to exhibit high transposition activity in vertebrate cells. Although a similar structural organization was observed for and transposons, the evolutionary profiles of their homologs in various species remain unknown. In the present study, we compared their taxonomic ranges, structural arrangements, sequence identities, evolution dynamics, and horizontal transfer occurrences in vertebrates. In total, 629 and 366 homologs were obtained and classified into four distinct clades, named , -like, and -like. They displayed narrow taxonomic distributions in eukaryotes, and were mostly found in vertebrates, Actinopterygii in particular tended to be the major reservoir hosts of these transposons. Similar structural features and high sequence identities were observed for transposons and transposase, notably homologous to the and elements. The genomic sequences that flank the and transposons in the genomes revealed highly conserved integration profiles with strong preferential integration into AT repeats. Both and transposons experienced horizontal transfer (HT) events, which were most common in Actinopterygii. Our current study helps to increase our understanding of the evolutionary properties and histories of and transposon families in animals.

摘要

斑马鱼()是在斑马鱼基因组中最近发现的一种 DNA 转座子,而,是一种最初在几种鱼类中发现的重建转座子,已知它们在脊椎动物细胞中具有很高的转座活性。虽然和转座子具有相似的结构组织,但它们在不同物种中的同源物的进化情况尚不清楚。在本研究中,我们比较了它们在脊椎动物中的分类范围、结构排列、序列同一性、进化动态和水平转移发生情况。总共获得了 629 个和 366 个同源物,并将它们分为四个不同的分支,分别命名为、-样、和-样。它们在真核生物中表现出狭窄的分类分布,主要存在于脊椎动物中,特别是硬骨鱼纲是这些转座子的主要宿主。转座子和转座酶表现出相似的结构特征和高序列同一性,特别是与和元件同源。在基因组中侧翼的和转座子的基因组序列显示出高度保守的整合模式,强烈偏好整合到 AT 重复序列中。和转座子都经历了水平转移(HT)事件,在硬骨鱼纲中最为常见。我们目前的研究有助于增加我们对动物中转座子家族的进化特性和历史的理解。

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