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利用比较基因组学鉴定新型耐胆盐基因及其在耐胆盐菌株快速筛选中的应用

Identification of Novel Bile Salt-Tolerant Genes in Using Comparative Genomics and Its Application in the Rapid Screening of Tolerant Strains.

作者信息

Chen Chunfei, Yu Leilei, Tian Fengwei, Zhao Jianxin, Zhai Qixiao

机构信息

State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, China.

School of Food Science and Technology, Jiangnan University, Wuxi 214122, China.

出版信息

Microorganisms. 2022 Nov 30;10(12):2371. doi: 10.3390/microorganisms10122371.

Abstract

Under bile salt treatment, strains display significant differences in their tolerance ability, suggesting the existence of diverse resistance mechanisms in ; however, the genes involved in this protective process are not fully understood. In this study, novel target genes associated with bile salt tolerance in were identified using comparative genomics for PCR detection and the rapid screening of tolerant strains. The bile salt tolerance of 107 isolated from different origins was assessed, and 26 strains with comparatively large differences were selected for further comparative genomic analysis. Tolerant strains had 112 specific genes that were enriched in the phosphotransferase system, the two-component system, carbohydrate metabolism, and the ATP-binding cassette transporter. Six genes from were cloned into the inducible lactobacillal expression vector pSIP403. Overexpression in the host strain increased its tolerance ability by 11.86-18.08%. The novel genes identified here can be used as targets to design primers for the rapid screening of bile salt-tolerant . Altogether, these results deepen our understanding of bile salt tolerance mechanisms in and provide a basis for further rapid assessments of tolerant strains.

摘要

在胆盐处理下,菌株在耐受能力上表现出显著差异,这表明 中存在多种抗性机制;然而,参与这一保护过程的基因尚未完全明确。在本研究中,利用比较基因组学进行PCR检测并快速筛选耐受菌株,鉴定出了与 胆盐耐受性相关的新靶基因。评估了从不同来源分离出的107株 的胆盐耐受性,并选择了26株差异较大的菌株进行进一步的比较基因组分析。耐受菌株有112个特定基因,这些基因在磷酸转移酶系统、双组分系统、碳水化合物代谢和ATP结合盒转运体中富集。从 中选取的6个基因被克隆到诱导型乳酸杆菌表达载体pSIP403中。在宿主菌株中过表达可使其耐受能力提高11.86 - 18.08%。这里鉴定出的新基因可作为设计引物的靶标,用于快速筛选胆盐耐受的 。总之,这些结果加深了我们对 胆盐耐受机制的理解,并为进一步快速评估耐受菌株提供了依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5e/9786149/6c26c791c105/microorganisms-10-02371-g001.jpg

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