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从活性污泥宏基因组中克隆并鉴定一种新型VI族酯酶

Molecular Cloning and Characterization of a New Family VI Esterase from an Activated Sludge Metagenome.

作者信息

Liaw Ren-Bao, Chen Jo-Ching, Cheng Mei-Ping

机构信息

Physiology Division, Livestock Research Institute, Council of Agriculture, Executive Yuan, Tainan 712009, Taiwan.

Breeding and Genetic Division, Livestock Research Institute, Council of Agriculture, Executive Yuan, Tainan 712009, Taiwan.

出版信息

Microorganisms. 2022 Dec 4;10(12):2403. doi: 10.3390/microorganisms10122403.

DOI:10.3390/microorganisms10122403
PMID:36557656
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9786865/
Abstract

A new esterase gene, , was discovered in an activated sludge metagenomic library. The 729-bp gene encodes a 242-amino acid protein (designated Est6) with a molecular mass of 26.1 kDa. Est6 shared only a moderate identity to a putative hydrolase with the highest BLASTP analysis score. Most of the closely related proteins are uncharacterized and are predicted from genome sequencing data of microorganisms or metagenomic DNA sequences. The phylogenetic analysis of Est6 showed that the protein was assigned to family VI esterases/lipases. The catalytic triad of Est6 was predicted to be Ser135, Asp188, and His219, with Ser135 in a typically conserved pentapeptide (GFSQG) of family VI members, which was further confirmed by site-directed mutagenesis. The gene was overexpressed successfully in its soluble form in and then purified to its tag-free form and homogeneity by affinity chromatography. The purified Est6 in pH 8.0 buffer was active as a monomer. The optimal conditions for Est6 activity were at a temperature of 45 °C and pH of 8.0 when using p-nitrophenyl acetate as a substrate. The enzyme was stable over wide temperature and pH ranges, and it exhibited activity in the presence of organic solvents, metal cations, or detergents. Furthermore, the enzyme showed significant regioselectivity in the spectrophotometric analysis. In conclusion, Est6 might have the potential for applications in biotechnological processes.

摘要

在一个活性污泥宏基因组文库中发现了一个新的酯酶基因。这个729个碱基对的基因编码一个242个氨基酸的蛋白质(命名为Est6),分子量为26.1 kDa。通过最高BLASTP分析得分,Est6与一种假定的水解酶仅有适度的同源性。大多数密切相关的蛋白质未被表征,是根据微生物基因组测序数据或宏基因组DNA序列预测的。Est6的系统发育分析表明该蛋白质属于VI型酯酶/脂肪酶家族。Est6的催化三联体预测为Ser135、Asp188和His219,其中Ser135位于VI型家族成员典型保守的五肽(GFSQG)中,这通过定点诱变得到了进一步证实。该基因在大肠杆菌中成功以可溶性形式过量表达,然后通过亲和层析纯化至无标签形式并达到均一性。在pH 8.0缓冲液中纯化的Est6以单体形式具有活性。当使用对硝基苯乙酸作为底物时,Est6活性的最佳条件是温度为45℃,pH为8.0。该酶在较宽的温度和pH范围内稳定,并且在有机溶剂、金属阳离子或去污剂存在的情况下仍表现出活性。此外,该酶在分光光度分析中表现出显著的区域选择性。总之,Est6在生物技术过程中可能具有应用潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/0855ed64907a/microorganisms-10-02403-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/e5ae3a42da13/microorganisms-10-02403-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/1e9d3c4dffce/microorganisms-10-02403-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/0ae7499ef5f6/microorganisms-10-02403-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/6d5decf88d3d/microorganisms-10-02403-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/3c586db780b7/microorganisms-10-02403-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/0855ed64907a/microorganisms-10-02403-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/e5ae3a42da13/microorganisms-10-02403-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/1e9d3c4dffce/microorganisms-10-02403-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/0ae7499ef5f6/microorganisms-10-02403-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/6d5decf88d3d/microorganisms-10-02403-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/3c586db780b7/microorganisms-10-02403-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f93d/9786865/0855ed64907a/microorganisms-10-02403-g006.jpg

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ColabFold: making protein folding accessible to all.ColabFold:让蛋白质折叠变得人人可用。
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Molecular Characterization of Novel Family IV and VIII Esterases from a Compost Metagenomic Library.
来自堆肥宏基因组文库的新型IV族和VIII族酯酶的分子特征分析
Microorganisms. 2021 Jul 29;9(8):1614. doi: 10.3390/microorganisms9081614.
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Highly accurate protein structure prediction with AlphaFold.利用 AlphaFold 进行高精度蛋白质结构预测。
Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15.
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Identification and characterization of a novel carboxylesterase EstQ7 from a soil metagenomic library.从土壤宏基因组文库中鉴定和表征一种新型羧酸酯酶 EstQ7。
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