Center for Molecular Modeling (CMM), Ghent University, Technologiepark 46, 9052Zwijnaarde, Belgium.
J Chem Theory Comput. 2023 Jan 10;19(1):18-24. doi: 10.1021/acs.jctc.2c00874. Epub 2022 Dec 23.
Although many molecular dynamics simulations treat the atomic nuclei as classical particles, an adequate description of nuclear quantum effects (NQEs) is indispensable when studying proton transfer reactions. Herein, quantum free energy profiles are constructed for three typical proton transfers, which properly take NQEs into account using the path integral formalism. The computational cost of the simulations is kept tractable by deriving machine learning potentials. It is shown that the classical and quasi-classical centroid free energy profiles of the proton transfers deviate substantially from the exact quantum free energy profile.
虽然许多分子动力学模拟将原子核视为经典粒子,但在研究质子转移反应时,对核量子效应(NQEs)的充分描述是必不可少的。在此,使用路径积分形式主义为三种典型的质子转移构建了量子自由能曲线,适当地考虑了 NQEs。通过导出机器学习势,使模拟的计算成本保持在可处理的范围内。结果表明,质子转移的经典和准经典质心自由能曲线与精确量子自由能曲线有很大的偏差。