Department of Chemistry, Yazd University, Yazd, Iran; Department of Chemistry, Shiraz University, Shiraz, 71946-84795, Iran.
Department of Chemistry, Shiraz University, Shiraz, 71946-84795, Iran.
J Mol Graph Model. 2023 Mar;119:108400. doi: 10.1016/j.jmgm.2022.108400. Epub 2022 Dec 27.
In this work, various atomic charge schemes including natural bond orbital (NBO), electrostatic potential based (CHELPG), and σ-hole model charges were applied in the OPLS-AA force field to investigate their effects on the thermophysical and structural properties of iodobenzene and its derivatives. Molecular dynamics simulations presented in this work show that the studied structural and thermophysical properties are in good agreement with experiments when the CHELPG charge was coupled with the OPLS-AA force field. Also, the arrangement of iodobenzene derivatives in the liquid phase was investigated via combined radial/angular distribution functions (CDFs) analyses and halogen-bonding theory. The most probable orientation of iodobenzene derivatives at the liquid/vacuum interface was assigned by atom density profile and bivariate orientational distribution maps. For all studied iodobenzene derivatives, benzene rings are oriented such that the iodine atoms tend toward the vacuum phase.
在这项工作中,应用了各种原子电荷方案,包括自然键轨道(NBO)、基于静电势的(CHELPG)和 σ-hole 模型电荷,应用于 OPLS-AA 力场中,以研究它们对碘苯及其衍生物的热物理和结构性质的影响。本文中的分子动力学模拟表明,当 CHELPG 电荷与 OPLS-AA 力场耦合时,研究的结构和热物理性质与实验结果非常吻合。此外,还通过组合径向/角度分布函数(CDFs)分析和卤键理论研究了碘苯衍生物在液相中的排列。通过原子密度分布和双变量取向分布图确定了碘苯衍生物在液/真空界面上的最可能取向。对于所有研究的碘苯衍生物,苯环的取向使得碘原子趋向于真空相。