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[烧伤患者耐碳青霉烯类细菌携带的质粒及其与菌株传播的相关性]

[Plasmids carried by carbapenems-resistant in burn patients and its correlation with strain transmission].

作者信息

Huang S Y, Gong Y L, Zhou D P, Jiang L L, Xiang L J, Chen Z H, Wang D L, Huang G T

机构信息

Department of Burns and Plastic Surgery, Affiliated Hospital of Zunyi Medical University, Zunyi 563003, China.

State Key Laboratory of Trauma, Burns and Combined Injury, Institute of Burn Research, the First Affiliated Hospital of Army Medical University (the Third Military Medical University), Chongqing 400038, China.

出版信息

Zhonghua Shao Shang Yu Chuang Mian Xiu Fu Za Zhi. 2022 Dec 20;38(12):1140-1147. doi: 10.3760/cma.j.cn501120-20210930-00343.

Abstract

To explore the carrier status of carbapenems-resistant (CRKP) plasmids in burn patients and analyze the correlation of these plasmids with the transmission of CRKP. A retrospective observational study was conducted. A total of 26 CRKP strains, which were isolated from the clinic-related samples of 22 burn patients (with 20 males and 2 females, aged (42±16) years) admitted to the First Affiliated Hospital of Army Medical University (the Third Military Medical University) from January to December 2017, were collected and individually numbered. The plasmids of the strains were extracted by alkali lysis. After determination of the plasmid concentration by a nucleic acid concentration detector, the agarose gel electrophoresis was used to visualize the bands, and rough plasmids typing was performed. The plasmid of the smallest numbered CRKP in each plasmid type was transformed into competent () strain Top10 (hereinafter referred to as TOP10 strain). The growth of each transformed strains and a Top10 strain cultivated in ampicillin containing Luria-Bertani (LB) agar medium overnight was observed, and the proportion of successful transformation was calculated. The plasmids from the smallest numbered plasmid carrying CRKP strain of successfully transformed Top10 strains (hereinafter referred to as the smallest successfully transformed strain) and correspondingly numbered CRKP were extracted, and then, the agarose gel electrophoresis was used to visualize the bands. Aforementioned successfully transformed strains and a TOP10 strain were used for the antimicrobial susceptibility testing with 17 antibiotics commonly used in clinic. The plasmid from the smallest successfully transformed strain was sequenced using the next-generation sequencing technology. Bioinformatics analyses such as protein-coding gene prediction and protein sequence alignment were performed successively. The sequence was subsequently named pKP03-NDM1 according to the carrying of drug resistance gene. According to the whole genome sequence of the plasmid carried by the smallest successfully transformed strain, the polymerase chain reaction, agarose gel electrophoresis, and gene sequencing were used to detect the New Delhi metallo-beta lactamase-1 () of plasmids in the remaining 25 strains of CRKP. The ST typing in multilocus sequence typing of 26 strains of CRKP was analyzed based on the literature. Plasmids were successfully extracted from 26 CRKP, with mass concentrations ranging from 19.3 to 189.8 ng/μL. Each of the 26 CRKP carrying plasmids showed at least one band longer than 2 500 bp in the agarose gel electrophoresis, which were roughly divided into 6 patterns of A, B, C, D, E, and F. After overnight cultivation, no growth of strains was observed in LB agar medium containing ampicillin inoculated with the TOP10 strain or TOP10 strains transformed by the plasmid of CRKP patterning A, B, D, or E. In contrast, TOP10 strains transformed by the pattern C plasmid from NO.3 CRKP and the pattern F plasmid from NO.15 CRKP resulted in numerous colony growths, and those transformed strains were named as TOP10-pKP03 and TOP10-pKP15, respectively. The proportion of successful transformation was 1/3. The plasmid carried by TOP10-pKP03 showed a single band in the agarose gel electrophoresis, which was the same size as the largest band of the plasmid from NO.3 CRKP. The TOP10 strain was sensitive to the 17 antibiotics commonly used in clinic. TOP10-pKP03 and TOP10-pKP15 were resistant to penicillins, cephalosporins, and carbapenems but remained sensitive to monocyclic β-lactam, aminoglycosides, quinolones and tigecycline. The full length of the plasmid carried by TOP10-pKP03 was 41 190 bp. In addition to , this plasmid carried , , bleomycin resistance gene, conjugation transfer elements, and relaxase, etc. The plasmid showed 99% nucleotide identity similarity and the same length to the plasmid pJN24NDM1 extracted from an isolate JN24. Totally 16 (61.5%) CRKP were confirmed to carrying gene, among the ST typing of the 16 strains, 11 strains were ST11, while ST215, ST260, ST395, ST2230, and new ST had 1 strain each. Among the ST typing of 10 -negative CRKP, 8 strains were ST11, while ST395 and ST2230 had 1 strain each. A gene carrying plasmid pKP03-NDM1 was extracted and sequenced from CRKP isolated from burn patients, with a high plasmid carrying rate. Meanwhile, this plasmid may mediate inter-CRKP and CRKP- horizontal transfer of , leading to transmission of antimicrobial resistance.

摘要

探讨烧伤患者耐碳青霉烯类肺炎克雷伯菌(CRKP)质粒的携带情况,分析此类质粒与CRKP传播的相关性。进行一项回顾性观察研究。收集2017年1月至12月陆军军医大学第一附属医院(第三军医大学)收治的22例烧伤患者(男20例,女2例,年龄(42±16)岁)临床相关样本中分离出的26株CRKP菌株,并分别编号。采用碱裂解法提取菌株质粒。用核酸浓度检测仪测定质粒浓度后,通过琼脂糖凝胶电泳观察条带,并进行粗略的质粒分型。将每种质粒型中编号最小的CRKP质粒转化入感受态大肠杆菌Top10菌株(以下简称TOP10菌株)。观察各转化菌株及在含氨苄西林的Luria-Bertani(LB)琼脂培养基中过夜培养的Top10菌株的生长情况,计算成功转化的比例。提取成功转化的Top10菌株(以下简称最小成功转化菌株)中编号最小的携带CRKP质粒的菌株及相应编号的CRKP的质粒,然后用琼脂糖凝胶电泳观察条带。用上述成功转化菌株和TOP10菌株对临床常用的17种抗生素进行药敏试验。用二代测序技术对最小成功转化菌株的质粒进行测序。依次进行蛋白质编码基因预测和蛋白质序列比对等生物信息学分析。根据耐药基因携带情况,该序列随后命名为pKP03-NDM1。根据最小成功转化菌株携带的质粒全基因组序列,采用聚合酶链反应、琼脂糖凝胶电泳及基因测序方法检测其余25株CRKP质粒中的新德里金属β-内酰胺酶-1(NDM-1)。根据文献分析26株CRKP多位点序列分型中的ST分型。从26株CRKP中成功提取质粒,质量浓度范围为19.3~189.8 ng/μL。26株携带质粒的CRKP在琼脂糖凝胶电泳中均显示至少一条大于2 500 bp的条带,大致分为A、B、C、D、E、F 6种模式。过夜培养后,接种TOP10菌株或由A、B、D或E型CRKP质粒转化的TOP10菌株的含氨苄西林LB琼脂培养基中未观察到菌株生长。相反,由3号CRKP的C型质粒和15号CRKP的F型质粒转化的TOP10菌株产生大量菌落生长,这些转化菌株分别命名为TOP10-pKP03和TOP10-pKP15。成功转化比例为1/3。TOP10-pKP03携带的质粒在琼脂糖凝胶电泳中显示单一条带,其大小与3号CRKP质粒的最大条带相同。TOP10菌株对临床常用的17种抗生素敏感。TOP10-pKP03和TOP10-pKP15对青霉素类、头孢菌素类和碳青霉烯类耐药,但对单环β-内酰胺类、氨基糖苷类、喹诺酮类和替加环素敏感。TOP10-pKP03携带的质粒全长41 190 bp。除NDM-1外,该质粒还携带blaOXA-48、blaTEM-1B、博来霉素抗性基因、接合转移元件和松弛酶等。该质粒与从一株肺炎克雷伯菌JN24分离出的质粒pJN24NDM1核苷酸同一性相似性为99%,且长度相同。共16株(61.5%)CRKP被证实携带NDM-1基因,在这16株的ST分型中,11株为ST11,而ST215、ST260、ST395、ST2230及新的ST型各有1株。在10株NDM-1阴性CRKP的ST分型中,8株为ST11,而ST395和ST2230各有1株。从烧伤患者分离的CRKP中提取并测序携带NDM-1基因的质粒pKP03-NDM1,质粒携带率高。同时,该质粒可能介导CRKP之间及CRKP与大肠埃希菌间NDM-1的水平转移,导致耐药性传播。

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